Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS14615 and AZOBR_RS14620 are separated by 145 nucleotides AZOBR_RS14620 and AZOBR_RS14625 are separated by 3 nucleotides
AZOBR_RS14615: AZOBR_RS14615 - hypothetical protein, at 47,711 to 48,022
_RS14615
AZOBR_RS14620: AZOBR_RS14620 - DNA topoisomerase I, at 48,168 to 49,286
_RS14620
AZOBR_RS14625: AZOBR_RS14625 - methyltransferase type 11, at 49,290 to 50,282
_RS14625
Position (kb) 48
49
50 Strain fitness (log2 ratio) -1
0
1
2 at 47.254 kb on + strand at 47.471 kb on - strand at 47.587 kb on + strand at 47.588 kb on - strand at 47.588 kb on - strand at 47.597 kb on - strand at 47.597 kb on - strand at 47.678 kb on - strand at 47.684 kb on - strand at 48.162 kb on - strand at 48.237 kb on + strand at 48.237 kb on + strand at 48.237 kb on + strand at 48.237 kb on + strand at 48.238 kb on - strand at 48.238 kb on - strand at 48.238 kb on - strand at 48.451 kb on - strand, within AZOBR_RS14620 at 48.648 kb on + strand, within AZOBR_RS14620 at 48.648 kb on + strand, within AZOBR_RS14620 at 48.838 kb on - strand, within AZOBR_RS14620 at 48.838 kb on - strand, within AZOBR_RS14620 at 48.891 kb on + strand, within AZOBR_RS14620 at 49.086 kb on + strand, within AZOBR_RS14620 at 49.086 kb on + strand, within AZOBR_RS14620 at 49.087 kb on - strand, within AZOBR_RS14620 at 49.087 kb on - strand, within AZOBR_RS14620 at 49.113 kb on + strand, within AZOBR_RS14620 at 49.113 kb on + strand, within AZOBR_RS14620 at 49.114 kb on - strand, within AZOBR_RS14620 at 49.114 kb on - strand, within AZOBR_RS14620 at 49.291 kb on + strand at 49.511 kb on - strand, within AZOBR_RS14625 at 49.511 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 47,254 + +0.6 47,471 - -1.3 47,587 + +0.1 47,588 - +0.2 47,588 - -1.4 47,597 - -0.1 47,597 - -0.1 47,678 - -0.0 47,684 - +1.0 48,162 - -1.1 48,237 + -0.8 48,237 + -0.1 48,237 + +0.2 48,237 + +0.3 48,238 - +1.1 48,238 - +0.3 48,238 - -0.3 48,451 - AZOBR_RS14620 0.25 +0.2 48,648 + AZOBR_RS14620 0.43 +0.0 48,648 + AZOBR_RS14620 0.43 +1.0 48,838 - AZOBR_RS14620 0.60 +0.2 48,838 - AZOBR_RS14620 0.60 +0.5 48,891 + AZOBR_RS14620 0.65 +0.2 49,086 + AZOBR_RS14620 0.82 +0.1 49,086 + AZOBR_RS14620 0.82 +1.2 49,087 - AZOBR_RS14620 0.82 +0.4 49,087 - AZOBR_RS14620 0.82 +0.3 49,113 + AZOBR_RS14620 0.84 -0.2 49,113 + AZOBR_RS14620 0.84 +2.0 49,114 - AZOBR_RS14620 0.85 +0.0 49,114 - AZOBR_RS14620 0.85 -0.1 49,291 + -0.4 49,511 - AZOBR_RS14625 0.22 +1.3 49,511 - +0.7
Or see this region's nucleotide sequence