Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS05760 and AZOBR_RS05765 are separated by 16 nucleotides AZOBR_RS05765 and AZOBR_RS05770 are separated by 103 nucleotides AZOBR_RS05770 and AZOBR_RS05775 are separated by 254 nucleotides
AZOBR_RS05760: AZOBR_RS05760 - hypothetical protein, at 1,221,254 to 1,222,294
_RS05760
AZOBR_RS05765: AZOBR_RS05765 - hypothetical protein, at 1,222,311 to 1,222,976
_RS05765
AZOBR_RS05770: AZOBR_RS05770 - 2-hydroxyacid dehydrogenase, at 1,223,080 to 1,224,468
_RS05770
AZOBR_RS05775: AZOBR_RS05775 - translation factor Sua5, at 1,224,723 to 1,225,694
_RS05775
Position (kb) 1223
1224
1225 Strain fitness (log2 ratio) -1
0
1 at 1222.313 kb on - strand at 1222.313 kb on - strand at 1222.781 kb on - strand, within AZOBR_RS05765 at 1222.781 kb on - strand, within AZOBR_RS05765 at 1222.781 kb on - strand, within AZOBR_RS05765 at 1222.784 kb on - strand, within AZOBR_RS05765 at 1223.651 kb on + strand, within AZOBR_RS05770 at 1223.651 kb on + strand, within AZOBR_RS05770 at 1223.652 kb on - strand, within AZOBR_RS05770 at 1223.652 kb on - strand, within AZOBR_RS05770 at 1223.652 kb on - strand, within AZOBR_RS05770 at 1223.652 kb on - strand, within AZOBR_RS05770 at 1223.652 kb on - strand, within AZOBR_RS05770 at 1224.176 kb on + strand, within AZOBR_RS05770 at 1224.176 kb on + strand, within AZOBR_RS05770 at 1224.176 kb on + strand, within AZOBR_RS05770 at 1224.177 kb on - strand, within AZOBR_RS05770 at 1224.177 kb on - strand, within AZOBR_RS05770 at 1224.177 kb on - strand, within AZOBR_RS05770 at 1224.177 kb on - strand, within AZOBR_RS05770 at 1224.410 kb on + strand at 1224.411 kb on - strand at 1224.411 kb on - strand at 1224.411 kb on - strand at 1224.684 kb on + strand at 1224.684 kb on + strand at 1224.711 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 1,222,313 - +0.7 1,222,313 - -0.4 1,222,781 - AZOBR_RS05765 0.71 +0.6 1,222,781 - AZOBR_RS05765 0.71 +0.7 1,222,781 - AZOBR_RS05765 0.71 -0.3 1,222,784 - AZOBR_RS05765 0.71 -1.1 1,223,651 + AZOBR_RS05770 0.41 +0.1 1,223,651 + AZOBR_RS05770 0.41 +0.1 1,223,652 - AZOBR_RS05770 0.41 +0.9 1,223,652 - AZOBR_RS05770 0.41 +0.4 1,223,652 - AZOBR_RS05770 0.41 +1.2 1,223,652 - AZOBR_RS05770 0.41 +0.5 1,223,652 - AZOBR_RS05770 0.41 -0.1 1,224,176 + AZOBR_RS05770 0.79 +0.1 1,224,176 + AZOBR_RS05770 0.79 -0.7 1,224,176 + AZOBR_RS05770 0.79 +0.8 1,224,177 - AZOBR_RS05770 0.79 -0.5 1,224,177 - AZOBR_RS05770 0.79 +0.0 1,224,177 - AZOBR_RS05770 0.79 +1.0 1,224,177 - AZOBR_RS05770 0.79 -0.0 1,224,410 + -0.6 1,224,411 - +1.1 1,224,411 - +0.3 1,224,411 - -0.0 1,224,684 + +0.1 1,224,684 + +0.8 1,224,711 - +0.8
Or see this region's nucleotide sequence