Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25640

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25635 and AO353_25640 are separated by 328 nucleotidesAO353_25640 and AO353_25645 are separated by 12 nucleotidesAO353_25645 and AO353_25650 are separated by 76 nucleotides AO353_25635: AO353_25635 - citrulline utilization hydrolase (from data), at 5,654,379 to 5,655,314 _25635 AO353_25640: AO353_25640 - AsnC family transcriptional regulator, at 5,655,643 to 5,656,119 _25640 AO353_25645: AO353_25645 - amino acid transporter, at 5,656,132 to 5,656,893 _25645 AO353_25650: AO353_25650 - amino acid ABC transporter permease, at 5,656,970 to 5,657,680 _25650 Position (kb) 5655 5656 5657Strain fitness (log2 ratio) -2 -1 0 1 2at 5654.761 kb on + strand, within AO353_25635at 5654.761 kb on + strand, within AO353_25635at 5654.761 kb on + strand, within AO353_25635at 5654.761 kb on + strand, within AO353_25635at 5654.925 kb on + strand, within AO353_25635at 5654.925 kb on + strand, within AO353_25635at 5654.925 kb on + strand, within AO353_25635at 5654.926 kb on - strand, within AO353_25635at 5654.926 kb on - strand, within AO353_25635at 5654.926 kb on - strand, within AO353_25635at 5654.926 kb on - strand, within AO353_25635at 5654.926 kb on - strand, within AO353_25635at 5654.997 kb on + strand, within AO353_25635at 5654.997 kb on + strand, within AO353_25635at 5654.998 kb on - strand, within AO353_25635at 5655.172 kb on + strand, within AO353_25635at 5655.172 kb on + strand, within AO353_25635at 5655.173 kb on - strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.204 kb on + strand, within AO353_25635at 5655.205 kb on - strand, within AO353_25635at 5655.383 kb on - strandat 5655.449 kb on + strandat 5655.449 kb on + strandat 5655.450 kb on - strandat 5655.477 kb on - strandat 5655.517 kb on - strandat 5655.564 kb on - strandat 5655.644 kb on + strandat 5655.644 kb on + strandat 5655.645 kb on - strandat 5655.645 kb on - strandat 5655.645 kb on - strandat 5655.645 kb on - strandat 5655.776 kb on + strand, within AO353_25640at 5655.777 kb on - strand, within AO353_25640at 5655.895 kb on + strand, within AO353_25640at 5656.031 kb on + strand, within AO353_25640at 5656.031 kb on + strand, within AO353_25640at 5656.031 kb on + strand, within AO353_25640at 5656.081 kb on - strandat 5656.101 kb on + strandat 5656.121 kb on + strandat 5656.121 kb on + strandat 5656.122 kb on - strandat 5656.122 kb on - strandat 5656.122 kb on - strandat 5656.122 kb on - strandat 5656.122 kb on - strandat 5656.122 kb on - strandat 5656.122 kb on - strandat 5656.162 kb on + strandat 5656.330 kb on + strand, within AO353_25645at 5656.330 kb on + strand, within AO353_25645at 5656.330 kb on + strand, within AO353_25645at 5656.330 kb on + strand, within AO353_25645at 5656.330 kb on + strand, within AO353_25645at 5656.331 kb on - strand, within AO353_25645at 5656.331 kb on - strand, within AO353_25645at 5656.331 kb on - strand, within AO353_25645at 5656.500 kb on - strand, within AO353_25645at 5656.750 kb on - strand, within AO353_25645at 5656.750 kb on - strand, within AO353_25645at 5656.750 kb on - strand, within AO353_25645at 5656.761 kb on + strand, within AO353_25645at 5656.761 kb on + strand, within AO353_25645at 5656.761 kb on + strand, within AO353_25645at 5656.761 kb on + strand, within AO353_25645at 5656.762 kb on - strand, within AO353_25645at 5656.762 kb on - strand, within AO353_25645at 5656.762 kb on - strand, within AO353_25645at 5656.762 kb on - strand, within AO353_25645at 5656.762 kb on - strand, within AO353_25645at 5656.762 kb on - strand, within AO353_25645at 5656.840 kb on + strandat 5656.840 kb on + strandat 5656.840 kb on + strandat 5656.840 kb on + strandat 5656.840 kb on + strandat 5656.840 kb on + strandat 5656.840 kb on + strandat 5656.841 kb on - strandat 5656.841 kb on - strandat 5656.841 kb on - strandat 5656.841 kb on - strandat 5656.841 kb on - strandat 5656.863 kb on + strandat 5656.863 kb on + strandat 5656.864 kb on - strandat 5656.864 kb on - strandat 5656.864 kb on - strandat 5656.864 kb on - strandat 5656.865 kb on + strandat 5656.865 kb on + strandat 5656.865 kb on + strandat 5656.866 kb on - strandat 5656.890 kb on - strandat 5656.890 kb on - strandat 5656.890 kb on - strandat 5657.053 kb on - strand, within AO353_25650

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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5,654,761 + AO353_25635 0.41 +0.1
5,654,761 + AO353_25635 0.41 +0.4
5,654,761 + AO353_25635 0.41 +0.1
5,654,761 + AO353_25635 0.41 -0.4
5,654,925 + AO353_25635 0.58 -0.3
5,654,925 + AO353_25635 0.58 +0.1
5,654,925 + AO353_25635 0.58 +0.3
5,654,926 - AO353_25635 0.58 -0.4
5,654,926 - AO353_25635 0.58 +0.6
5,654,926 - AO353_25635 0.58 +0.8
5,654,926 - AO353_25635 0.58 +0.5
5,654,926 - AO353_25635 0.58 +0.1
5,654,997 + AO353_25635 0.66 -0.9
5,654,997 + AO353_25635 0.66 -1.1
5,654,998 - AO353_25635 0.66 +0.1
5,655,172 + AO353_25635 0.85 -0.4
5,655,172 + AO353_25635 0.85 +0.7
5,655,173 - AO353_25635 0.85 +0.3
5,655,204 + AO353_25635 0.88 -1.9
5,655,204 + AO353_25635 0.88 -1.5
5,655,204 + AO353_25635 0.88 +1.8
5,655,204 + AO353_25635 0.88 +0.1
5,655,204 + AO353_25635 0.88 -0.5
5,655,204 + AO353_25635 0.88 +0.2
5,655,205 - AO353_25635 0.88 +0.7
5,655,383 - -0.1
5,655,449 + +0.3
5,655,449 + -0.5
5,655,450 - -1.0
5,655,477 - -0.7
5,655,517 - +0.3
5,655,564 - -0.0
5,655,644 + +1.5
5,655,644 + +1.1
5,655,645 - +0.7
5,655,645 - -0.0
5,655,645 - -0.3
5,655,645 - -0.7
5,655,776 + AO353_25640 0.28 +0.7
5,655,777 - AO353_25640 0.28 -1.9
5,655,895 + AO353_25640 0.53 +0.3
5,656,031 + AO353_25640 0.81 -0.5
5,656,031 + AO353_25640 0.81 -0.9
5,656,031 + AO353_25640 0.81 -1.0
5,656,081 - +0.0
5,656,101 + -1.5
5,656,121 + +0.1
5,656,121 + -0.7
5,656,122 - +2.0
5,656,122 - -0.1
5,656,122 - -0.9
5,656,122 - -1.0
5,656,122 - +0.1
5,656,122 - -1.3
5,656,122 - -0.7
5,656,162 + -0.9
5,656,330 + AO353_25645 0.26 -1.0
5,656,330 + AO353_25645 0.26 -1.0
5,656,330 + AO353_25645 0.26 +0.1
5,656,330 + AO353_25645 0.26 -0.1
5,656,330 + AO353_25645 0.26 -1.5
5,656,331 - AO353_25645 0.26 +2.3
5,656,331 - AO353_25645 0.26 -1.3
5,656,331 - AO353_25645 0.26 +0.3
5,656,500 - AO353_25645 0.48 +0.3
5,656,750 - AO353_25645 0.81 +1.3
5,656,750 - AO353_25645 0.81 -0.9
5,656,750 - AO353_25645 0.81 -1.3
5,656,761 + AO353_25645 0.83 -0.5
5,656,761 + AO353_25645 0.83 -1.2
5,656,761 + AO353_25645 0.83 +0.2
5,656,761 + AO353_25645 0.83 +0.4
5,656,762 - AO353_25645 0.83 +1.6
5,656,762 - AO353_25645 0.83 +0.2
5,656,762 - AO353_25645 0.83 -0.9
5,656,762 - AO353_25645 0.83 +1.0
5,656,762 - AO353_25645 0.83 -0.4
5,656,762 - AO353_25645 0.83 +0.3
5,656,840 + -1.6
5,656,840 + +1.3
5,656,840 + -1.4
5,656,840 + -0.3
5,656,840 + -0.3
5,656,840 + +0.2
5,656,840 + +0.7
5,656,841 - +0.3
5,656,841 - -0.7
5,656,841 - -0.3
5,656,841 - +0.3
5,656,841 - +1.0
5,656,863 + +0.7
5,656,863 + +0.1
5,656,864 - -0.2
5,656,864 - +0.0
5,656,864 - -0.1
5,656,864 - +1.0
5,656,865 + +1.3
5,656,865 + -1.2
5,656,865 + +2.0
5,656,866 - +0.2
5,656,890 - +0.3
5,656,890 - -0.4
5,656,890 - -0.3
5,657,053 - AO353_25650 0.12 +0.5

Or see this region's nucleotide sequence