Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21380

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21375 and AO353_21380 are separated by 354 nucleotidesAO353_21380 and AO353_21385 are separated by 70 nucleotides AO353_21375: AO353_21375 - oxidoreductase, at 4,679,661 to 4,680,713 _21375 AO353_21380: AO353_21380 - rhizopine-binding protein, at 4,681,068 to 4,681,994 _21380 AO353_21385: AO353_21385 - m-Inositol ABC transporter, ATPase component (itaA) (from data), at 4,682,065 to 4,683,630 _21385 Position (kb) 4681 4682Strain fitness (log2 ratio) -3 -2 -1 0 1at 4680.109 kb on + strand, within AO353_21375at 4680.109 kb on + strand, within AO353_21375at 4680.109 kb on + strand, within AO353_21375at 4680.109 kb on + strand, within AO353_21375at 4680.110 kb on - strand, within AO353_21375at 4680.110 kb on - strand, within AO353_21375at 4680.110 kb on - strand, within AO353_21375at 4680.225 kb on + strand, within AO353_21375at 4680.225 kb on + strand, within AO353_21375at 4680.241 kb on - strand, within AO353_21375at 4680.323 kb on + strand, within AO353_21375at 4680.323 kb on + strand, within AO353_21375at 4680.323 kb on + strand, within AO353_21375at 4680.324 kb on - strand, within AO353_21375at 4680.324 kb on - strand, within AO353_21375at 4680.324 kb on - strand, within AO353_21375at 4680.324 kb on - strand, within AO353_21375at 4680.381 kb on + strand, within AO353_21375at 4680.549 kb on + strand, within AO353_21375at 4680.550 kb on - strand, within AO353_21375at 4680.550 kb on - strand, within AO353_21375at 4680.553 kb on + strand, within AO353_21375at 4680.553 kb on + strand, within AO353_21375at 4680.553 kb on + strand, within AO353_21375at 4680.553 kb on + strand, within AO353_21375at 4680.553 kb on + strand, within AO353_21375at 4680.554 kb on - strand, within AO353_21375at 4680.554 kb on - strand, within AO353_21375at 4680.632 kb on - strandat 4680.632 kb on - strandat 4680.776 kb on - strandat 4680.846 kb on + strandat 4680.846 kb on + strandat 4680.846 kb on + strandat 4680.846 kb on + strandat 4680.847 kb on - strandat 4680.847 kb on - strandat 4680.847 kb on - strandat 4680.889 kb on + strandat 4680.889 kb on + strandat 4680.890 kb on - strandat 4681.035 kb on + strandat 4681.036 kb on - strandat 4681.042 kb on + strandat 4681.042 kb on + strandat 4681.042 kb on + strandat 4681.042 kb on + strandat 4681.042 kb on + strandat 4681.043 kb on - strandat 4681.043 kb on - strandat 4681.043 kb on - strandat 4681.043 kb on - strandat 4681.188 kb on + strand, within AO353_21380at 4681.188 kb on + strandat 4681.188 kb on + strand, within AO353_21380at 4681.188 kb on + strand, within AO353_21380at 4681.189 kb on - strand, within AO353_21380at 4681.189 kb on - strand, within AO353_21380at 4681.189 kb on - strand, within AO353_21380at 4681.189 kb on - strand, within AO353_21380at 4681.402 kb on - strand, within AO353_21380at 4681.402 kb on - strand, within AO353_21380at 4681.402 kb on - strand, within AO353_21380at 4681.449 kb on - strand, within AO353_21380at 4681.449 kb on - strand, within AO353_21380at 4681.494 kb on + strand, within AO353_21380at 4681.494 kb on + strand, within AO353_21380at 4681.494 kb on + strand, within AO353_21380at 4681.495 kb on - strand, within AO353_21380at 4681.495 kb on - strand, within AO353_21380at 4681.495 kb on - strand, within AO353_21380at 4681.782 kb on - strand, within AO353_21380at 4681.782 kb on - strand, within AO353_21380at 4681.808 kb on + strand, within AO353_21380at 4681.809 kb on - strand, within AO353_21380at 4681.809 kb on - strand, within AO353_21380at 4681.809 kb on - strand, within AO353_21380at 4681.992 kb on + strandat 4681.992 kb on + strandat 4681.992 kb on + strandat 4681.993 kb on - strandat 4682.017 kb on + strandat 4682.017 kb on + strandat 4682.018 kb on - strandat 4682.018 kb on - strandat 4682.018 kb on - strandat 4682.018 kb on - strandat 4682.018 kb on - strandat 4682.018 kb on - strandat 4682.018 kb on - strandat 4682.018 kb on - strandat 4682.018 kb on - strandat 4682.057 kb on - strandat 4682.140 kb on + strandat 4682.140 kb on + strandat 4682.293 kb on + strand, within AO353_21385at 4682.293 kb on + strand, within AO353_21385at 4682.293 kb on + strand, within AO353_21385at 4682.293 kb on + strand, within AO353_21385at 4682.293 kb on + strand, within AO353_21385at 4682.294 kb on - strand, within AO353_21385at 4682.294 kb on - strand, within AO353_21385at 4682.294 kb on - strand, within AO353_21385at 4682.321 kb on + strand, within AO353_21385at 4682.605 kb on + strand, within AO353_21385at 4682.606 kb on - strand, within AO353_21385at 4682.606 kb on - strand, within AO353_21385at 4682.606 kb on - strand, within AO353_21385at 4682.719 kb on + strand, within AO353_21385at 4682.719 kb on + strand, within AO353_21385at 4682.719 kb on + strand, within AO353_21385at 4682.719 kb on + strand, within AO353_21385at 4682.719 kb on + strand, within AO353_21385at 4682.719 kb on + strand, within AO353_21385at 4682.719 kb on + strandat 4682.719 kb on + strand, within AO353_21385at 4682.719 kb on + strand, within AO353_21385at 4682.719 kb on + strand, within AO353_21385at 4682.719 kb on + strand, within AO353_21385at 4682.719 kb on + strand, within AO353_21385at 4682.719 kb on + strand, within AO353_21385at 4682.719 kb on + strand, within AO353_21385at 4682.719 kb on + strand, within AO353_21385at 4682.720 kb on - strand, within AO353_21385at 4682.720 kb on - strand, within AO353_21385at 4682.720 kb on - strand, within AO353_21385at 4682.720 kb on - strand, within AO353_21385at 4682.720 kb on - strandat 4682.720 kb on - strand, within AO353_21385at 4682.720 kb on - strand, within AO353_21385at 4682.720 kb on - strand, within AO353_21385at 4682.720 kb on - strand, within AO353_21385at 4682.720 kb on - strand, within AO353_21385at 4682.720 kb on - strand, within AO353_21385at 4682.720 kb on - strand, within AO353_21385at 4682.720 kb on - strand, within AO353_21385at 4682.720 kb on - strand, within AO353_21385at 4682.720 kb on - strand, within AO353_21385at 4682.720 kb on - strand, within AO353_21385at 4682.721 kb on + strand, within AO353_21385at 4682.721 kb on + strand, within AO353_21385at 4682.721 kb on + strand, within AO353_21385at 4682.721 kb on + strand, within AO353_21385at 4682.722 kb on - strand, within AO353_21385at 4682.788 kb on + strand, within AO353_21385at 4682.788 kb on + strand, within AO353_21385at 4682.788 kb on + strand, within AO353_21385at 4682.788 kb on + strand, within AO353_21385at 4682.788 kb on + strand, within AO353_21385at 4682.788 kb on + strand, within AO353_21385at 4682.788 kb on + strand, within AO353_21385at 4682.788 kb on + strand, within AO353_21385at 4682.788 kb on + strand, within AO353_21385at 4682.788 kb on + strand, within AO353_21385at 4682.788 kb on + strand, within AO353_21385at 4682.789 kb on - strand, within AO353_21385at 4682.789 kb on - strand, within AO353_21385at 4682.789 kb on - strand, within AO353_21385

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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4,680,109 + AO353_21375 0.43 -1.0
4,680,109 + AO353_21375 0.43 +0.5
4,680,109 + AO353_21375 0.43 +0.3
4,680,109 + AO353_21375 0.43 -0.9
4,680,110 - AO353_21375 0.43 -2.0
4,680,110 - AO353_21375 0.43 -0.5
4,680,110 - AO353_21375 0.43 -2.4
4,680,225 + AO353_21375 0.54 -1.1
4,680,225 + AO353_21375 0.54 +0.6
4,680,241 - AO353_21375 0.55 -1.3
4,680,323 + AO353_21375 0.63 -0.2
4,680,323 + AO353_21375 0.63 +0.9
4,680,323 + AO353_21375 0.63 -0.9
4,680,324 - AO353_21375 0.63 -1.7
4,680,324 - AO353_21375 0.63 +0.5
4,680,324 - AO353_21375 0.63 -0.3
4,680,324 - AO353_21375 0.63 -1.4
4,680,381 + AO353_21375 0.68 -1.1
4,680,549 + AO353_21375 0.84 -0.3
4,680,550 - AO353_21375 0.84 -1.5
4,680,550 - AO353_21375 0.84 -2.2
4,680,553 + AO353_21375 0.85 -0.5
4,680,553 + AO353_21375 0.85 +1.5
4,680,553 + AO353_21375 0.85 -0.0
4,680,553 + AO353_21375 0.85 -1.3
4,680,553 + AO353_21375 0.85 -0.4
4,680,554 - AO353_21375 0.85 -2.1
4,680,554 - AO353_21375 0.85 +0.2
4,680,632 - -3.3
4,680,632 - -2.9
4,680,776 - -2.2
4,680,846 + -1.5
4,680,846 + -0.9
4,680,846 + -3.1
4,680,846 + -1.5
4,680,847 - -1.5
4,680,847 - -2.1
4,680,847 - -1.0
4,680,889 + -2.6
4,680,889 + -2.3
4,680,890 - -2.3
4,681,035 + -1.5
4,681,036 - -1.5
4,681,042 + -2.3
4,681,042 + -2.0
4,681,042 + -0.3
4,681,042 + -0.9
4,681,042 + -2.2
4,681,043 - -0.5
4,681,043 - -2.2
4,681,043 - -0.1
4,681,043 - -1.5
4,681,188 + AO353_21380 0.13 +0.5
4,681,188 + -0.9
4,681,188 + AO353_21380 0.13 -1.5
4,681,188 + AO353_21380 0.13 -2.8
4,681,189 - AO353_21380 0.13 -0.9
4,681,189 - AO353_21380 0.13 -1.6
4,681,189 - AO353_21380 0.13 -2.9
4,681,189 - AO353_21380 0.13 -2.4
4,681,402 - AO353_21380 0.36 -1.3
4,681,402 - AO353_21380 0.36 -1.5
4,681,402 - AO353_21380 0.36 -2.2
4,681,449 - AO353_21380 0.41 -0.9
4,681,449 - AO353_21380 0.41 -2.1
4,681,494 + AO353_21380 0.46 -0.5
4,681,494 + AO353_21380 0.46 -1.7
4,681,494 + AO353_21380 0.46 -2.6
4,681,495 - AO353_21380 0.46 -1.5
4,681,495 - AO353_21380 0.46 -1.3
4,681,495 - AO353_21380 0.46 -0.1
4,681,782 - AO353_21380 0.77 -1.9
4,681,782 - AO353_21380 0.77 -2.9
4,681,808 + AO353_21380 0.80 -1.3
4,681,809 - AO353_21380 0.80 -0.5
4,681,809 - AO353_21380 0.80 -2.8
4,681,809 - AO353_21380 0.80 -0.5
4,681,992 + -0.9
4,681,992 + -1.9
4,681,992 + -1.0
4,681,993 - -2.5
4,682,017 + -1.3
4,682,017 + -1.9
4,682,018 - -0.9
4,682,018 - -1.3
4,682,018 - -0.9
4,682,018 - -0.5
4,682,018 - +1.5
4,682,018 - +0.5
4,682,018 - -1.1
4,682,018 - -1.1
4,682,018 - -1.5
4,682,057 - -3.0
4,682,140 + -2.1
4,682,140 + -1.1
4,682,293 + AO353_21385 0.15 -1.1
4,682,293 + AO353_21385 0.15 -2.4
4,682,293 + AO353_21385 0.15 -1.9
4,682,293 + AO353_21385 0.15 -2.1
4,682,293 + AO353_21385 0.15 -0.1
4,682,294 - AO353_21385 0.15 -1.1
4,682,294 - AO353_21385 0.15 -1.6
4,682,294 - AO353_21385 0.15 -3.7
4,682,321 + AO353_21385 0.16 -2.3
4,682,605 + AO353_21385 0.34 -2.6
4,682,606 - AO353_21385 0.35 -1.1
4,682,606 - AO353_21385 0.35 -3.2
4,682,606 - AO353_21385 0.35 -0.9
4,682,719 + AO353_21385 0.42 -1.7
4,682,719 + AO353_21385 0.42 -0.5
4,682,719 + AO353_21385 0.42 -2.1
4,682,719 + AO353_21385 0.42 +0.5
4,682,719 + AO353_21385 0.42 -2.2
4,682,719 + AO353_21385 0.42 +1.5
4,682,719 + -0.5
4,682,719 + AO353_21385 0.42 -3.1
4,682,719 + AO353_21385 0.42 -2.2
4,682,719 + AO353_21385 0.42 -2.4
4,682,719 + AO353_21385 0.42 -2.4
4,682,719 + AO353_21385 0.42 -2.7
4,682,719 + AO353_21385 0.42 -3.0
4,682,719 + AO353_21385 0.42 -1.1
4,682,719 + AO353_21385 0.42 -1.5
4,682,720 - AO353_21385 0.42 -1.1
4,682,720 - AO353_21385 0.42 -1.7
4,682,720 - AO353_21385 0.42 -2.0
4,682,720 - AO353_21385 0.42 -1.1
4,682,720 - +0.5
4,682,720 - AO353_21385 0.42 -1.3
4,682,720 - AO353_21385 0.42 -2.9
4,682,720 - AO353_21385 0.42 -1.7
4,682,720 - AO353_21385 0.42 -0.9
4,682,720 - AO353_21385 0.42 -0.9
4,682,720 - AO353_21385 0.42 -3.0
4,682,720 - AO353_21385 0.42 -2.3
4,682,720 - AO353_21385 0.42 +0.5
4,682,720 - AO353_21385 0.42 -2.8
4,682,720 - AO353_21385 0.42 -1.2
4,682,720 - AO353_21385 0.42 -2.1
4,682,721 + AO353_21385 0.42 -1.7
4,682,721 + AO353_21385 0.42 -1.5
4,682,721 + AO353_21385 0.42 -2.6
4,682,721 + AO353_21385 0.42 -0.5
4,682,722 - AO353_21385 0.42 -0.9
4,682,788 + AO353_21385 0.46 -2.5
4,682,788 + AO353_21385 0.46 +0.5
4,682,788 + AO353_21385 0.46 -2.9
4,682,788 + AO353_21385 0.46 +1.5
4,682,788 + AO353_21385 0.46 -1.6
4,682,788 + AO353_21385 0.46 -2.2
4,682,788 + AO353_21385 0.46 -1.1
4,682,788 + AO353_21385 0.46 -2.4
4,682,788 + AO353_21385 0.46 -3.0
4,682,788 + AO353_21385 0.46 -0.1
4,682,788 + AO353_21385 0.46 -2.0
4,682,789 - AO353_21385 0.46 -2.9
4,682,789 - AO353_21385 0.46 -1.5
4,682,789 - AO353_21385 0.46 -2.0

Or see this region's nucleotide sequence