Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3073

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3071 and Shewana3_3072 are separated by 86 nucleotidesShewana3_3072 and Shewana3_3073 are separated by 470 nucleotidesShewana3_3073 and Shewana3_3074 are separated by 63 nucleotides Shewana3_3071: Shewana3_3071 - glutamate-1-semialdehyde aminotransferase (RefSeq), at 3,683,258 to 3,684,550 _3071 Shewana3_3072: Shewana3_3072 - hypothetical protein (RefSeq), at 3,684,637 to 3,684,834 _3072 Shewana3_3073: Shewana3_3073 - citrate transporter (RefSeq), at 3,685,305 to 3,686,615 _3073 Shewana3_3074: Shewana3_3074 - general secretion pathway protein B (RefSeq), at 3,686,679 to 3,687,779 _3074 Position (kb) 3685 3686 3687Strain fitness (log2 ratio) -3 -2 -1 0 1at 3684.557 kb on + strandat 3684.732 kb on + strand, within Shewana3_3072at 3685.280 kb on - strandat 3685.501 kb on - strand, within Shewana3_3073at 3686.223 kb on + strand, within Shewana3_3073at 3686.347 kb on + strand, within Shewana3_3073at 3686.387 kb on + strand, within Shewana3_3073at 3686.395 kb on - strand, within Shewana3_3073at 3686.395 kb on - strand, within Shewana3_3073at 3687.099 kb on - strand, within Shewana3_3074at 3687.187 kb on - strand, within Shewana3_3074at 3687.316 kb on + strand, within Shewana3_3074at 3687.612 kb on - strand, within Shewana3_3074

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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3,684,557 + -0.7
3,684,732 + Shewana3_3072 0.48 +0.6
3,685,280 - -0.6
3,685,501 - Shewana3_3073 0.15 +0.4
3,686,223 + Shewana3_3073 0.70 +0.1
3,686,347 + Shewana3_3073 0.79 +0.1
3,686,387 + Shewana3_3073 0.83 -2.8
3,686,395 - Shewana3_3073 0.83 +1.3
3,686,395 - Shewana3_3073 0.83 +0.6
3,687,099 - Shewana3_3074 0.38 +0.7
3,687,187 - Shewana3_3074 0.46 +0.5
3,687,316 + Shewana3_3074 0.58 -2.5
3,687,612 - Shewana3_3074 0.85 +0.2

Or see this region's nucleotide sequence