Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1233

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1232 and engA are separated by 79 nucleotidesengA and xseA are separated by 149 nucleotides Shewana3_1232: Shewana3_1232 - outer membrane protein assembly complex subunit YfgL (RefSeq), at 1,435,755 to 1,436,942 _1232 Shewana3_1233: engA - GTP-binding protein EngA (RefSeq), at 1,437,022 to 1,438,488 engA Shewana3_1234: xseA - exodeoxyribonuclease VII large subunit (RefSeq), at 1,438,638 to 1,439,984 xseA Position (kb) 1437 1438 1439Strain fitness (log2 ratio) -1 0 1at 1436.925 kb on + strandat 1436.934 kb on - strandat 1438.686 kb on + strandat 1438.686 kb on + strandat 1438.742 kb on - strandat 1438.847 kb on + strand, within xseAat 1438.900 kb on - strand, within xseAat 1439.085 kb on + strand, within xseAat 1439.307 kb on + strand, within xseAat 1439.336 kb on - strand, within xseA

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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1,436,925 + -0.0
1,436,934 - +0.8
1,438,686 + +0.3
1,438,686 + -0.6
1,438,742 - +0.5
1,438,847 + xseA Shewana3_1234 0.16 -0.6
1,438,900 - xseA Shewana3_1234 0.19 -0.4
1,439,085 + xseA Shewana3_1234 0.33 +0.1
1,439,307 + xseA Shewana3_1234 0.50 -0.4
1,439,336 - xseA Shewana3_1234 0.52 +0.3

Or see this region's nucleotide sequence