Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0791 and Shewana3_0792 are separated by 2 nucleotides Shewana3_0792 and Shewana3_0793 are separated by 7 nucleotides Shewana3_0793 and Shewana3_0794 are separated by 250 nucleotides
Shewana3_0791: Shewana3_0791 - UDP-N-acetylmuramate (RefSeq), at 911,715 to 913,112
_0791
Shewana3_0792: Shewana3_0792 - aromatic acid decarboxylase (RefSeq), at 913,115 to 913,774
_0792
Shewana3_0793: Shewana3_0793 - hypoxanthine phosphoribosyltransferase (RefSeq), at 913,782 to 914,312
_0793
Shewana3_0794: Shewana3_0794 - ABC transporter related (RefSeq), at 914,563 to 915,501
_0794
Position (kb) 913
914
915 Strain fitness (log2 ratio) -1
0
1 at 912.841 kb on + strand, within Shewana3_0791 at 912.949 kb on + strand, within Shewana3_0791 at 913.977 kb on + strand, within Shewana3_0793 at 913.995 kb on + strand, within Shewana3_0793 at 913.995 kb on + strand, within Shewana3_0793 at 914.474 kb on - strand at 914.561 kb on - strand at 914.711 kb on + strand, within Shewana3_0794 at 914.803 kb on - strand, within Shewana3_0794 at 914.812 kb on + strand, within Shewana3_0794 at 914.813 kb on - strand, within Shewana3_0794
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 912,841 + Shewana3_0791 0.81 +0.7 912,949 + Shewana3_0791 0.88 +0.2 913,977 + Shewana3_0793 0.37 -0.4 913,995 + Shewana3_0793 0.40 -1.0 913,995 + Shewana3_0793 0.40 -1.2 914,474 - +0.2 914,561 - -0.4 914,711 + Shewana3_0794 0.16 -0.3 914,803 - Shewana3_0794 0.26 -0.3 914,812 + Shewana3_0794 0.27 -0.3 914,813 - Shewana3_0794 0.27 +0.7
Or see this region's nucleotide sequence