Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0785 and Shewana3_0786 are separated by 33 nucleotides Shewana3_0786 and Shewana3_0787 are separated by 184 nucleotides Shewana3_0787 and Shewana3_0788 are separated by 268 nucleotides
Shewana3_0785: Shewana3_0785 - peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq), at 906,609 to 907,196
_0785
Shewana3_0786: Shewana3_0786 - hypothetical protein (RefSeq), at 907,230 to 907,808
_0786
Shewana3_0787: Shewana3_0787 - OmpA-like transmembrane domain-containing protein (RefSeq), at 907,993 to 908,496
_0787
Shewana3_0788: Shewana3_0788 - hypothetical protein (RefSeq), at 908,765 to 909,796
_0788
Position (kb) 907
908
909 Strain fitness (log2 ratio) -1
0
1 at 907.166 kb on + strand at 907.406 kb on - strand, within Shewana3_0786 at 907.670 kb on + strand, within Shewana3_0786 at 907.893 kb on + strand at 907.901 kb on - strand at 907.916 kb on - strand at 907.985 kb on + strand at 907.990 kb on + strand at 907.990 kb on + strand at 907.990 kb on + strand at 908.196 kb on + strand, within Shewana3_0787 at 908.237 kb on + strand, within Shewana3_0787 at 908.253 kb on - strand, within Shewana3_0787 at 908.316 kb on - strand, within Shewana3_0787 at 908.359 kb on + strand, within Shewana3_0787 at 908.413 kb on + strand, within Shewana3_0787 at 908.489 kb on - strand at 908.750 kb on + strand at 908.753 kb on - strand at 908.797 kb on - strand at 909.213 kb on + strand, within Shewana3_0788 at 909.213 kb on + strand, within Shewana3_0788 at 909.221 kb on - strand, within Shewana3_0788 at 909.277 kb on - strand, within Shewana3_0788 at 909.286 kb on - strand, within Shewana3_0788 at 909.326 kb on - strand, within Shewana3_0788
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 907,166 + +0.6 907,406 - Shewana3_0786 0.30 -0.1 907,670 + Shewana3_0786 0.76 +0.2 907,893 + +0.3 907,901 - +0.1 907,916 - -0.0 907,985 + -0.5 907,990 + +0.4 907,990 + -0.5 907,990 + +0.4 908,196 + Shewana3_0787 0.40 +0.2 908,237 + Shewana3_0787 0.48 +0.4 908,253 - Shewana3_0787 0.52 +0.7 908,316 - Shewana3_0787 0.64 -1.0 908,359 + Shewana3_0787 0.73 -1.0 908,413 + Shewana3_0787 0.83 -1.1 908,489 - +0.3 908,750 + -0.5 908,753 - -0.4 908,797 - +0.8 909,213 + Shewana3_0788 0.43 -0.1 909,213 + Shewana3_0788 0.43 +0.2 909,221 - Shewana3_0788 0.44 +0.5 909,277 - Shewana3_0788 0.50 +0.3 909,286 - Shewana3_0788 0.50 -0.0 909,326 - Shewana3_0788 0.54 +0.3
Or see this region's nucleotide sequence