Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0627 and Shewana3_0628 are separated by 550 nucleotides Shewana3_0628 and Shewana3_0629 are separated by 118 nucleotides Shewana3_0629 and Shewana3_0630 are separated by 68 nucleotides
Shewana3_0627: Shewana3_0627 - hypothetical protein (RefSeq), at 736,683 to 737,444
_0627
Shewana3_0628: Shewana3_0628 - hypothetical protein (RefSeq), at 737,995 to 738,405
_0628
Shewana3_0629: Shewana3_0629 - hypothetical protein (RefSeq), at 738,524 to 738,754
_0629
Shewana3_0630: Shewana3_0630 - no description, at 738,823 to 741,005
_0630
Position (kb) 737
738
739 Strain fitness (log2 ratio) -1
0
1 at 737.012 kb on - strand, within Shewana3_0627 at 737.028 kb on + strand, within Shewana3_0627 at 737.028 kb on + strand, within Shewana3_0627 at 737.111 kb on + strand, within Shewana3_0627 at 737.187 kb on - strand, within Shewana3_0627 at 737.252 kb on + strand, within Shewana3_0627 at 737.292 kb on - strand, within Shewana3_0627 at 737.300 kb on - strand, within Shewana3_0627 at 737.378 kb on + strand at 737.548 kb on + strand at 737.684 kb on - strand at 737.740 kb on - strand at 737.802 kb on + strand at 737.833 kb on + strand at 737.833 kb on + strand at 737.833 kb on + strand at 737.841 kb on - strand at 737.841 kb on - strand at 738.059 kb on + strand, within Shewana3_0628 at 738.249 kb on - strand, within Shewana3_0628 at 738.285 kb on + strand, within Shewana3_0628 at 738.327 kb on - strand, within Shewana3_0628 at 738.478 kb on + strand at 738.836 kb on + strand at 738.929 kb on + strand at 738.939 kb on + strand at 739.156 kb on - strand, within Shewana3_0630 at 739.214 kb on + strand, within Shewana3_0630 at 739.285 kb on + strand, within Shewana3_0630
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 737,012 - Shewana3_0627 0.43 -0.3 737,028 + Shewana3_0627 0.45 +0.4 737,028 + Shewana3_0627 0.45 +0.3 737,111 + Shewana3_0627 0.56 +1.3 737,187 - Shewana3_0627 0.66 +0.1 737,252 + Shewana3_0627 0.75 +0.8 737,292 - Shewana3_0627 0.80 -0.0 737,300 - Shewana3_0627 0.81 +0.0 737,378 + +0.2 737,548 + +0.9 737,684 - +0.5 737,740 - +0.1 737,802 + -0.1 737,833 + +0.2 737,833 + +0.2 737,833 + -0.3 737,841 - +0.3 737,841 - +0.2 738,059 + Shewana3_0628 0.16 -1.1 738,249 - Shewana3_0628 0.62 -0.6 738,285 + Shewana3_0628 0.71 -1.2 738,327 - Shewana3_0628 0.81 -0.0 738,478 + -0.0 738,836 + +0.1 738,929 + +0.1 738,939 + +0.5 739,156 - Shewana3_0630 0.15 -0.3 739,214 + Shewana3_0630 0.18 +0.5 739,285 + Shewana3_0630 0.21 -1.7
Or see this region's nucleotide sequence