Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0571 and Shewana3_0572 are separated by 558 nucleotides Shewana3_0572 and Shewana3_0573 are separated by 65 nucleotides
Shewana3_0571: Shewana3_0571 - response regulator receiver protein (RefSeq), at 663,306 to 664,301
_0571
Shewana3_0572: Shewana3_0572 - enoyl-CoA hydratase (RefSeq), at 664,860 to 665,666
_0572
Shewana3_0573: Shewana3_0573 - hypothetical protein (RefSeq), at 665,732 to 666,691
_0573
Position (kb) 664
665
666 Strain fitness (log2 ratio) -1
0
1
2 at 663.887 kb on + strand, within Shewana3_0571 at 664.109 kb on + strand, within Shewana3_0571 at 664.109 kb on - strand, within Shewana3_0571 at 664.166 kb on - strand, within Shewana3_0571 at 664.166 kb on - strand, within Shewana3_0571 at 664.166 kb on - strand, within Shewana3_0571 at 664.246 kb on - strand at 664.248 kb on - strand at 664.281 kb on + strand at 664.281 kb on + strand at 664.281 kb on + strand at 664.294 kb on - strand at 664.336 kb on + strand at 664.394 kb on - strand at 664.646 kb on - strand at 664.903 kb on + strand at 664.911 kb on - strand at 665.159 kb on + strand, within Shewana3_0572 at 665.159 kb on + strand, within Shewana3_0572 at 665.186 kb on + strand, within Shewana3_0572 at 665.192 kb on - strand, within Shewana3_0572 at 665.295 kb on + strand, within Shewana3_0572 at 665.544 kb on + strand, within Shewana3_0572 at 665.544 kb on + strand, within Shewana3_0572 at 665.546 kb on + strand, within Shewana3_0572 at 665.552 kb on - strand, within Shewana3_0572 at 665.552 kb on - strand, within Shewana3_0572 at 665.552 kb on - strand, within Shewana3_0572 at 665.569 kb on + strand, within Shewana3_0572 at 665.772 kb on - strand at 665.846 kb on + strand, within Shewana3_0573 at 666.221 kb on + strand, within Shewana3_0573 at 666.229 kb on - strand, within Shewana3_0573 at 666.304 kb on + strand, within Shewana3_0573 at 666.312 kb on - strand, within Shewana3_0573 at 666.437 kb on + strand, within Shewana3_0573 at 666.437 kb on + strand, within Shewana3_0573 at 666.581 kb on - strand, within Shewana3_0573
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 663,887 + Shewana3_0571 0.58 +0.6 664,109 + Shewana3_0571 0.81 +0.6 664,109 - Shewana3_0571 0.81 -0.5 664,166 - Shewana3_0571 0.86 +0.5 664,166 - Shewana3_0571 0.86 +0.3 664,166 - Shewana3_0571 0.86 +0.1 664,246 - +0.2 664,248 - -1.5 664,281 + -0.4 664,281 + -0.7 664,281 + +0.1 664,294 - -0.3 664,336 + +0.3 664,394 - -0.2 664,646 - +1.8 664,903 + +1.0 664,911 - +1.8 665,159 + Shewana3_0572 0.37 +0.2 665,159 + Shewana3_0572 0.37 +0.6 665,186 + Shewana3_0572 0.40 +0.1 665,192 - Shewana3_0572 0.41 +0.1 665,295 + Shewana3_0572 0.54 +0.1 665,544 + Shewana3_0572 0.85 +0.0 665,544 + Shewana3_0572 0.85 +0.3 665,546 + Shewana3_0572 0.85 -1.0 665,552 - Shewana3_0572 0.86 +0.5 665,552 - Shewana3_0572 0.86 -0.5 665,552 - Shewana3_0572 0.86 +0.1 665,569 + Shewana3_0572 0.88 +0.4 665,772 - +0.1 665,846 + Shewana3_0573 0.12 +0.2 666,221 + Shewana3_0573 0.51 -0.1 666,229 - Shewana3_0573 0.52 -0.0 666,304 + Shewana3_0573 0.60 +0.4 666,312 - Shewana3_0573 0.60 +0.1 666,437 + Shewana3_0573 0.73 +0.8 666,437 + Shewana3_0573 0.73 +0.3 666,581 - Shewana3_0573 0.88 -0.4
Or see this region's nucleotide sequence