Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0023

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0022 and fadA are separated by 224 nucleotidesfadA and fadB are separated by 22 nucleotides Shewana3_0022: Shewana3_0022 - diguanylate cyclase (RefSeq), at 26,815 to 28,026 _0022 Shewana3_0023: fadA - Acetyl-CoA C-acyltransferase (EC 2.3.1.16) (from data), at 28,251 to 29,414 fadA Shewana3_0024: fadB - Enoyl-CoA hydratase (EC 4.2.1.17); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) (from data), at 29,437 to 31,587 fadB Position (kb) 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1at 27.279 kb on - strand, within Shewana3_0022at 27.314 kb on - strand, within Shewana3_0022at 27.315 kb on + strand, within Shewana3_0022at 27.340 kb on + strand, within Shewana3_0022at 27.340 kb on + strand, within Shewana3_0022at 27.340 kb on + strand, within Shewana3_0022at 27.348 kb on - strand, within Shewana3_0022at 27.381 kb on + strand, within Shewana3_0022at 27.438 kb on + strand, within Shewana3_0022at 27.446 kb on - strand, within Shewana3_0022at 27.763 kb on - strand, within Shewana3_0022at 27.763 kb on - strand, within Shewana3_0022at 27.763 kb on - strand, within Shewana3_0022at 27.763 kb on - strand, within Shewana3_0022at 27.831 kb on + strand, within Shewana3_0022at 27.850 kb on + strand, within Shewana3_0022at 27.978 kb on + strandat 28.041 kb on - strandat 28.069 kb on + strandat 28.069 kb on + strandat 28.069 kb on + strandat 28.071 kb on + strandat 28.077 kb on - strandat 28.077 kb on - strandat 28.077 kb on - strandat 28.143 kb on - strandat 28.169 kb on + strandat 28.249 kb on + strandat 28.256 kb on - strandat 28.283 kb on + strandat 28.283 kb on + strandat 28.292 kb on - strandat 28.375 kb on - strand, within fadAat 28.377 kb on + strand, within fadAat 28.385 kb on - strand, within fadAat 28.418 kb on - strand, within fadAat 28.428 kb on - strand, within fadAat 28.438 kb on - strand, within fadAat 28.445 kb on + strand, within fadAat 28.445 kb on + strand, within fadAat 28.454 kb on + strand, within fadAat 28.464 kb on + strand, within fadAat 28.473 kb on - strand, within fadAat 28.473 kb on - strand, within fadAat 28.473 kb on - strand, within fadAat 28.734 kb on + strand, within fadAat 28.742 kb on - strand, within fadAat 28.804 kb on + strand, within fadAat 28.841 kb on - strand, within fadAat 28.874 kb on - strand, within fadAat 28.903 kb on - strand, within fadAat 28.931 kb on + strand, within fadAat 28.947 kb on - strand, within fadAat 29.012 kb on - strand, within fadAat 29.042 kb on - strand, within fadAat 29.065 kb on - strand, within fadAat 29.220 kb on - strand, within fadAat 29.222 kb on - strand, within fadAat 29.225 kb on + strand, within fadAat 29.233 kb on - strand, within fadAat 29.233 kb on - strand, within fadAat 29.289 kb on - strand, within fadAat 29.297 kb on + strand, within fadAat 29.297 kb on + strand, within fadAat 29.305 kb on - strandat 29.370 kb on + strandat 29.370 kb on + strandat 29.378 kb on - strandat 29.378 kb on - strandat 29.378 kb on - strandat 29.458 kb on - strandat 29.512 kb on - strandat 29.560 kb on - strandat 29.580 kb on - strandat 29.614 kb on - strandat 29.655 kb on + strand, within fadBat 29.663 kb on - strand, within fadBat 29.839 kb on - strand, within fadBat 29.976 kb on - strand, within fadBat 30.174 kb on + strand, within fadBat 30.174 kb on + strand, within fadBat 30.179 kb on + strand, within fadBat 30.182 kb on - strand, within fadBat 30.200 kb on + strand, within fadBat 30.227 kb on + strand, within fadBat 30.227 kb on + strand, within fadBat 30.235 kb on - strand, within fadBat 30.235 kb on - strand, within fadBat 30.235 kb on - strand, within fadBat 30.235 kb on - strand, within fadB

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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27,279 - Shewana3_0022 0.38 -0.1
27,314 - Shewana3_0022 0.41 +0.2
27,315 + Shewana3_0022 0.41 +0.1
27,340 + Shewana3_0022 0.43 +0.4
27,340 + Shewana3_0022 0.43 +0.1
27,340 + Shewana3_0022 0.43 -0.1
27,348 - Shewana3_0022 0.44 -0.3
27,381 + Shewana3_0022 0.47 -0.8
27,438 + Shewana3_0022 0.51 -0.1
27,446 - Shewana3_0022 0.52 -0.0
27,763 - Shewana3_0022 0.78 -2.8
27,763 - Shewana3_0022 0.78 -0.6
27,763 - Shewana3_0022 0.78 -0.6
27,763 - Shewana3_0022 0.78 -0.4
27,831 + Shewana3_0022 0.84 -0.4
27,850 + Shewana3_0022 0.85 +0.3
27,978 + +0.3
28,041 - -0.1
28,069 + -0.1
28,069 + -0.3
28,069 + +0.9
28,071 + +0.4
28,077 - -0.3
28,077 - -0.6
28,077 - +0.6
28,143 - +0.5
28,169 + -0.4
28,249 + +0.9
28,256 - -0.8
28,283 + +0.5
28,283 + -1.0
28,292 - -0.0
28,375 - fadA Shewana3_0023 0.11 -0.6
28,377 + fadA Shewana3_0023 0.11 +0.3
28,385 - fadA Shewana3_0023 0.12 +0.6
28,418 - fadA Shewana3_0023 0.14 +0.4
28,428 - fadA Shewana3_0023 0.15 +0.2
28,438 - fadA Shewana3_0023 0.16 -0.7
28,445 + fadA Shewana3_0023 0.17 +0.5
28,445 + fadA Shewana3_0023 0.17 -0.4
28,454 + fadA Shewana3_0023 0.17 +0.4
28,464 + fadA Shewana3_0023 0.18 +0.1
28,473 - fadA Shewana3_0023 0.19 +0.2
28,473 - fadA Shewana3_0023 0.19 -0.1
28,473 - fadA Shewana3_0023 0.19 -0.8
28,734 + fadA Shewana3_0023 0.41 +0.3
28,742 - fadA Shewana3_0023 0.42 +0.2
28,804 + fadA Shewana3_0023 0.48 -0.1
28,841 - fadA Shewana3_0023 0.51 +0.9
28,874 - fadA Shewana3_0023 0.54 -0.6
28,903 - fadA Shewana3_0023 0.56 +0.4
28,931 + fadA Shewana3_0023 0.58 -0.2
28,947 - fadA Shewana3_0023 0.60 +0.4
29,012 - fadA Shewana3_0023 0.65 -0.0
29,042 - fadA Shewana3_0023 0.68 +0.3
29,065 - fadA Shewana3_0023 0.70 +0.2
29,220 - fadA Shewana3_0023 0.83 +0.5
29,222 - fadA Shewana3_0023 0.83 +0.4
29,225 + fadA Shewana3_0023 0.84 +0.9
29,233 - fadA Shewana3_0023 0.84 -0.5
29,233 - fadA Shewana3_0023 0.84 +0.4
29,289 - fadA Shewana3_0023 0.89 +0.5
29,297 + fadA Shewana3_0023 0.90 +0.1
29,297 + fadA Shewana3_0023 0.90 +0.6
29,305 - +0.3
29,370 + -0.2
29,370 + +0.3
29,378 - -0.4
29,378 - +0.8
29,378 - +0.2
29,458 - +0.5
29,512 - -0.0
29,560 - +0.5
29,580 - -0.0
29,614 - -0.0
29,655 + fadB Shewana3_0024 0.10 -0.0
29,663 - fadB Shewana3_0024 0.11 +0.1
29,839 - fadB Shewana3_0024 0.19 +0.2
29,976 - fadB Shewana3_0024 0.25 -1.4
30,174 + fadB Shewana3_0024 0.34 -1.0
30,174 + fadB Shewana3_0024 0.34 +0.4
30,179 + fadB Shewana3_0024 0.34 +0.4
30,182 - fadB Shewana3_0024 0.35 +0.1
30,200 + fadB Shewana3_0024 0.35 -1.3
30,227 + fadB Shewana3_0024 0.37 -0.0
30,227 + fadB Shewana3_0024 0.37 -0.1
30,235 - fadB Shewana3_0024 0.37 +0.1
30,235 - fadB Shewana3_0024 0.37 +1.7
30,235 - fadB Shewana3_0024 0.37 -0.4
30,235 - fadB Shewana3_0024 0.37 +0.7

Or see this region's nucleotide sequence