Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4357 and Shewana3_4358 are separated by 857 nucleotides Shewana3_4358 and Shewana3_4359 are separated by 137 nucleotides Shewana3_4359 and Shewana3_4360 are separated by 511 nucleotides
Shewana3_4357: Shewana3_4357 - hypothetical protein (RefSeq), at 242,263 to 243,072
_4357
Shewana3_4358: Shewana3_4358 - phage integrase family protein (RefSeq), at 243,930 to 244,595
_4358
Shewana3_4359: Shewana3_4359 - hypothetical protein (RefSeq), at 244,733 to 245,080
_4359
Shewana3_4360: Shewana3_4360 - hypothetical protein (RefSeq), at 245,592 to 245,894
_4360
Position (kb) 243
244
245 Strain fitness (log2 ratio) -2
-1
0
1 at 242.945 kb on + strand, within Shewana3_4357 at 243.462 kb on - strand at 243.495 kb on + strand at 243.695 kb on + strand at 243.890 kb on + strand at 244.132 kb on + strand, within Shewana3_4358 at 244.198 kb on + strand, within Shewana3_4358 at 244.443 kb on + strand, within Shewana3_4358 at 244.450 kb on + strand, within Shewana3_4358 at 244.458 kb on - strand, within Shewana3_4358 at 244.517 kb on - strand, within Shewana3_4358 at 244.555 kb on + strand at 244.666 kb on - strand at 245.105 kb on - strand at 245.255 kb on - strand at 245.507 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 242,945 + Shewana3_4357 0.84 -1.1 243,462 - +1.3 243,495 + -0.2 243,695 + -2.4 243,890 + +0.7 244,132 + Shewana3_4358 0.30 -0.0 244,198 + Shewana3_4358 0.40 -0.3 244,443 + Shewana3_4358 0.77 -0.2 244,450 + Shewana3_4358 0.78 -0.3 244,458 - Shewana3_4358 0.79 +1.2 244,517 - Shewana3_4358 0.88 -1.2 244,555 + -0.9 244,666 - +0.8 245,105 - +0.3 245,255 - +1.4 245,507 + -0.0
Or see this region's nucleotide sequence