Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4239

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4238 and Shewana3_4239 are separated by 49 nucleotidesShewana3_4239 and Shewana3_4240 are separated by 197 nucleotides Shewana3_4238: Shewana3_4238 - hypothetical protein (RefSeq), at 110,255 to 112,495 _4238 Shewana3_4239: Shewana3_4239 - no description, at 112,545 to 113,054 _4239 Shewana3_4240: Shewana3_4240 - N-6 DNA methylase (RefSeq), at 113,252 to 114,955 _4240 Position (kb) 112 113 114Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 111.589 kb on - strand, within Shewana3_4238at 111.591 kb on - strand, within Shewana3_4238at 111.599 kb on - strand, within Shewana3_4238at 111.599 kb on - strand, within Shewana3_4238at 111.599 kb on - strand, within Shewana3_4238at 111.599 kb on - strand, within Shewana3_4238at 111.601 kb on + strand, within Shewana3_4238at 111.618 kb on + strand, within Shewana3_4238at 111.618 kb on + strand, within Shewana3_4238at 111.618 kb on + strand, within Shewana3_4238at 111.618 kb on + strand, within Shewana3_4238at 111.618 kb on + strand, within Shewana3_4238at 111.618 kb on + strand, within Shewana3_4238at 111.618 kb on + strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.626 kb on - strand, within Shewana3_4238at 111.628 kb on + strand, within Shewana3_4238at 111.628 kb on + strand, within Shewana3_4238at 111.628 kb on + strand, within Shewana3_4238at 111.628 kb on + strand, within Shewana3_4238at 111.636 kb on - strand, within Shewana3_4238at 111.636 kb on - strand, within Shewana3_4238at 111.636 kb on - strand, within Shewana3_4238at 111.636 kb on - strand, within Shewana3_4238at 111.636 kb on - strand, within Shewana3_4238at 111.636 kb on - strand, within Shewana3_4238at 111.759 kb on - strand, within Shewana3_4238at 111.765 kb on + strand, within Shewana3_4238at 111.765 kb on + strand, within Shewana3_4238at 111.768 kb on + strand, within Shewana3_4238at 111.787 kb on + strand, within Shewana3_4238at 111.859 kb on + strand, within Shewana3_4238at 111.867 kb on - strand, within Shewana3_4238at 111.868 kb on - strand, within Shewana3_4238at 111.872 kb on - strand, within Shewana3_4238at 111.878 kb on + strand, within Shewana3_4238at 111.884 kb on - strand, within Shewana3_4238at 111.888 kb on + strand, within Shewana3_4238at 111.888 kb on + strand, within Shewana3_4238at 111.896 kb on - strand, within Shewana3_4238at 111.896 kb on - strand, within Shewana3_4238at 111.897 kb on - strand, within Shewana3_4238at 111.898 kb on - strand, within Shewana3_4238at 111.905 kb on - strand, within Shewana3_4238at 111.918 kb on - strand, within Shewana3_4238at 111.965 kb on - strand, within Shewana3_4238at 111.974 kb on + strand, within Shewana3_4238at 112.028 kb on + strand, within Shewana3_4238at 112.036 kb on - strand, within Shewana3_4238at 112.036 kb on - strand, within Shewana3_4238at 112.086 kb on + strandat 112.089 kb on + strand, within Shewana3_4238at 112.094 kb on - strand, within Shewana3_4238at 112.104 kb on + strand, within Shewana3_4238at 112.116 kb on + strand, within Shewana3_4238at 112.137 kb on + strand, within Shewana3_4238at 112.197 kb on + strand, within Shewana3_4238at 112.218 kb on + strand, within Shewana3_4238at 112.237 kb on - strand, within Shewana3_4238at 112.298 kb on + strandat 112.342 kb on - strandat 112.344 kb on - strandat 112.403 kb on - strandat 112.436 kb on + strandat 112.452 kb on - strandat 112.453 kb on - strandat 112.503 kb on - strandat 112.545 kb on - strandat 112.599 kb on - strand, within Shewana3_4239at 112.766 kb on + strand, within Shewana3_4239at 112.784 kb on + strand, within Shewana3_4239at 112.807 kb on + strand, within Shewana3_4239at 112.948 kb on - strand, within Shewana3_4239at 112.949 kb on - strand, within Shewana3_4239at 112.970 kb on + strand, within Shewana3_4239at 112.970 kb on + strand, within Shewana3_4239at 112.970 kb on + strand, within Shewana3_4239at 112.970 kb on + strand, within Shewana3_4239at 112.975 kb on + strand, within Shewana3_4239at 112.978 kb on - strand, within Shewana3_4239at 112.978 kb on - strand, within Shewana3_4239at 112.978 kb on - strand, within Shewana3_4239at 112.993 kb on - strand, within Shewana3_4239at 113.025 kb on - strandat 113.027 kb on + strandat 113.188 kb on - strandat 113.242 kb on - strandat 113.317 kb on + strandat 113.317 kb on + strandat 113.317 kb on + strandat 113.363 kb on + strandat 113.363 kb on + strandat 113.365 kb on - strandat 113.365 kb on - strandat 113.396 kb on + strandat 113.406 kb on - strandat 113.416 kb on + strandat 113.508 kb on + strand, within Shewana3_4240at 113.542 kb on - strand, within Shewana3_4240at 113.708 kb on - strand, within Shewana3_4240at 113.896 kb on + strand, within Shewana3_4240at 113.960 kb on + strand, within Shewana3_4240

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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111,589 - Shewana3_4238 0.60 -0.2
111,591 - Shewana3_4238 0.60 +0.0
111,599 - Shewana3_4238 0.60 +0.3
111,599 - Shewana3_4238 0.60 +0.6
111,599 - Shewana3_4238 0.60 -0.3
111,599 - Shewana3_4238 0.60 +0.2
111,601 + Shewana3_4238 0.60 -3.5
111,618 + Shewana3_4238 0.61 -0.3
111,618 + Shewana3_4238 0.61 +0.2
111,618 + Shewana3_4238 0.61 -0.2
111,618 + Shewana3_4238 0.61 +0.1
111,618 + Shewana3_4238 0.61 +0.6
111,618 + Shewana3_4238 0.61 +0.3
111,618 + Shewana3_4238 0.61 +0.4
111,626 - Shewana3_4238 0.61 -0.3
111,626 - Shewana3_4238 0.61 -0.4
111,626 - Shewana3_4238 0.61 +0.1
111,626 - Shewana3_4238 0.61 -0.0
111,626 - Shewana3_4238 0.61 -0.1
111,626 - Shewana3_4238 0.61 -0.8
111,626 - Shewana3_4238 0.61 -0.4
111,626 - Shewana3_4238 0.61 +0.3
111,626 - Shewana3_4238 0.61 -0.8
111,626 - Shewana3_4238 0.61 -2.8
111,626 - Shewana3_4238 0.61 -0.0
111,626 - Shewana3_4238 0.61 -0.3
111,626 - Shewana3_4238 0.61 +2.2
111,626 - Shewana3_4238 0.61 -3.0
111,626 - Shewana3_4238 0.61 +0.6
111,626 - Shewana3_4238 0.61 +0.2
111,626 - Shewana3_4238 0.61 -0.2
111,626 - Shewana3_4238 0.61 +0.2
111,628 + Shewana3_4238 0.61 -0.0
111,628 + Shewana3_4238 0.61 -0.3
111,628 + Shewana3_4238 0.61 +0.6
111,628 + Shewana3_4238 0.61 -0.1
111,636 - Shewana3_4238 0.62 -0.1
111,636 - Shewana3_4238 0.62 -0.2
111,636 - Shewana3_4238 0.62 +1.9
111,636 - Shewana3_4238 0.62 +0.1
111,636 - Shewana3_4238 0.62 +0.2
111,636 - Shewana3_4238 0.62 -0.0
111,759 - Shewana3_4238 0.67 +0.9
111,765 + Shewana3_4238 0.67 +0.3
111,765 + Shewana3_4238 0.67 -0.5
111,768 + Shewana3_4238 0.68 -2.0
111,787 + Shewana3_4238 0.68 -1.8
111,859 + Shewana3_4238 0.72 +0.2
111,867 - Shewana3_4238 0.72 -0.2
111,868 - Shewana3_4238 0.72 -0.8
111,872 - Shewana3_4238 0.72 -0.3
111,878 + Shewana3_4238 0.72 +1.2
111,884 - Shewana3_4238 0.73 +0.4
111,888 + Shewana3_4238 0.73 +0.5
111,888 + Shewana3_4238 0.73 +0.7
111,896 - Shewana3_4238 0.73 +0.4
111,896 - Shewana3_4238 0.73 +0.3
111,897 - Shewana3_4238 0.73 -0.5
111,898 - Shewana3_4238 0.73 -1.7
111,905 - Shewana3_4238 0.74 +1.1
111,918 - Shewana3_4238 0.74 +0.4
111,965 - Shewana3_4238 0.76 +0.5
111,974 + Shewana3_4238 0.77 +2.1
112,028 + Shewana3_4238 0.79 +0.7
112,036 - Shewana3_4238 0.79 -0.5
112,036 - Shewana3_4238 0.79 -0.2
112,086 + +0.2
112,089 + Shewana3_4238 0.82 +0.1
112,094 - Shewana3_4238 0.82 +0.4
112,104 + Shewana3_4238 0.83 -0.8
112,116 + Shewana3_4238 0.83 -0.5
112,137 + Shewana3_4238 0.84 +0.5
112,197 + Shewana3_4238 0.87 +0.5
112,218 + Shewana3_4238 0.88 -0.2
112,237 - Shewana3_4238 0.88 +0.1
112,298 + +0.5
112,342 - -0.3
112,344 - +0.3
112,403 - +1.7
112,436 + +0.3
112,452 - -0.3
112,453 - +0.1
112,503 - +1.5
112,545 - -0.4
112,599 - Shewana3_4239 0.11 +0.4
112,766 + Shewana3_4239 0.43 -0.7
112,784 + Shewana3_4239 0.47 +0.1
112,807 + Shewana3_4239 0.51 -0.1
112,948 - Shewana3_4239 0.79 -0.0
112,949 - Shewana3_4239 0.79 -0.1
112,970 + Shewana3_4239 0.83 +1.4
112,970 + Shewana3_4239 0.83 -0.0
112,970 + Shewana3_4239 0.83 -0.4
112,970 + Shewana3_4239 0.83 -0.4
112,975 + Shewana3_4239 0.84 -0.1
112,978 - Shewana3_4239 0.85 +0.2
112,978 - Shewana3_4239 0.85 -0.2
112,978 - Shewana3_4239 0.85 -0.8
112,993 - Shewana3_4239 0.88 +0.0
113,025 - +0.5
113,027 + +0.2
113,188 - +0.3
113,242 - +0.1
113,317 + -0.1
113,317 + +0.6
113,317 + -0.2
113,363 + +0.3
113,363 + -0.3
113,365 - +0.4
113,365 - +0.5
113,396 + +1.0
113,406 - -0.4
113,416 + +0.4
113,508 + Shewana3_4240 0.15 -0.3
113,542 - Shewana3_4240 0.17 +0.2
113,708 - Shewana3_4240 0.27 -0.2
113,896 + Shewana3_4240 0.38 -0.3
113,960 + Shewana3_4240 0.42 +0.2

Or see this region's nucleotide sequence