Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4177 and Shewana3_4178 are separated by 550 nucleotides Shewana3_4178 and Shewana3_4179 are separated by 275 nucleotides
Shewana3_4177: Shewana3_4177 - CBS domain-containing protein (RefSeq), at 43,496 to 44,170
_4177
Shewana3_4178: Shewana3_4178 - hypothetical protein (RefSeq), at 44,721 to 45,335
_4178
Shewana3_4179: Shewana3_4179 - hypothetical protein (RefSeq), at 45,611 to 46,507
_4179
Position (kb) 44
45
46 Strain fitness (log2 ratio) -2
-1
0
1 at 43.821 kb on - strand, within Shewana3_4177 at 43.827 kb on - strand, within Shewana3_4177 at 43.849 kb on + strand, within Shewana3_4177 at 44.367 kb on - strand at 44.621 kb on + strand at 44.623 kb on + strand at 44.692 kb on + strand at 44.718 kb on + strand at 44.858 kb on - strand, within Shewana3_4178 at 44.998 kb on - strand, within Shewana3_4178 at 45.170 kb on - strand, within Shewana3_4178 at 45.214 kb on - strand, within Shewana3_4178 at 45.437 kb on - strand at 45.481 kb on - strand at 45.512 kb on - strand at 45.567 kb on - strand at 45.605 kb on - strand at 45.659 kb on + strand at 45.679 kb on - strand at 45.709 kb on - strand, within Shewana3_4179 at 45.911 kb on + strand, within Shewana3_4179 at 45.954 kb on + strand, within Shewana3_4179 at 46.010 kb on - strand, within Shewana3_4179 at 46.118 kb on + strand, within Shewana3_4179 at 46.121 kb on - strand, within Shewana3_4179 at 46.133 kb on - strand, within Shewana3_4179 at 46.160 kb on + strand, within Shewana3_4179 at 46.289 kb on - strand, within Shewana3_4179
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 43,821 - Shewana3_4177 0.48 +0.8 43,827 - Shewana3_4177 0.49 -0.5 43,849 + Shewana3_4177 0.52 +0.7 44,367 - -0.8 44,621 + +0.9 44,623 + -0.3 44,692 + -0.4 44,718 + +1.2 44,858 - Shewana3_4178 0.22 -0.6 44,998 - Shewana3_4178 0.45 -0.5 45,170 - Shewana3_4178 0.73 +0.2 45,214 - Shewana3_4178 0.80 -1.4 45,437 - -0.4 45,481 - +0.3 45,512 - +1.0 45,567 - -0.3 45,605 - +0.8 45,659 + -1.8 45,679 - -0.6 45,709 - Shewana3_4179 0.11 +0.3 45,911 + Shewana3_4179 0.33 +0.3 45,954 + Shewana3_4179 0.38 -0.2 46,010 - Shewana3_4179 0.44 +0.8 46,118 + Shewana3_4179 0.57 +0.6 46,121 - Shewana3_4179 0.57 +1.1 46,133 - Shewana3_4179 0.58 -0.2 46,160 + Shewana3_4179 0.61 +0.2 46,289 - Shewana3_4179 0.76 +0.0
Or see this region's nucleotide sequence