Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2374

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
2,959,284	+		BT2373	0.45	+0.9
2,959,333	-		BT2373	0.48	+1.3
2,959,344	-		BT2373	0.48	-1.4
2,959,417	+		BT2373	0.53	-1.7
2,959,467	+		BT2373	0.56	-0.8
2,959,490	+		BT2373	0.58	-0.2
2,959,491	-		BT2373	0.58	+0.5
2,959,496	-		BT2373	0.58	-1.7
2,959,620	+		BT2373	0.66	-1.8
2,959,743	+		BT2373	0.74	-1.4
2,959,752	+		BT2373	0.75	-1.6
2,959,753	-		BT2373	0.75	-0.8
2,959,759	+		BT2373	0.75	-1.0
2,959,760	-		BT2373	0.75	-2.1
2,959,790	+		BT2373	0.77	+0.6
2,959,791	-		BT2373	0.77	-0.8
2,959,810	+		BT2373	0.78	-1.1
2,959,812	+		BT2373	0.78	-0.6
2,959,813	-		BT2373	0.78	-0.0
2,959,844	+		BT2373	0.80	+0.5
2,959,880	-		BT2373	0.83	-0.6
2,959,883	-		BT2373	0.83	-1.2
2,959,903	-		BT2373	0.84	-1.5
2,959,903	-		BT2373	0.84	-1.4
2,959,942	-		BT2373	0.87	+1.3
2,959,962	+		BT2373	0.88	-2.4
2,960,044	+				-1.0
2,960,127	-				-0.0
2,960,127	-				-0.2
2,960,130	+				+1.8
2,960,131	-				+2.0
2,960,133	+				-0.3
2,960,133	+				+0.1
2,960,137	-				-1.7
2,960,140	+				+0.7
2,960,164	+				-1.9
2,960,295	-				+0.6
2,960,295	-				-3.0
2,960,364	+		BT2374	0.11	+1.0
2,960,464	+		BT2374	0.16	+0.9
2,960,466	+		BT2374	0.16	+1.4
2,960,466	+		BT2374	0.16	+1.4
2,960,466	+		BT2374	0.16	+0.2
2,960,482	+		BT2374	0.17	-0.1
2,960,492	-		BT2374	0.17	+1.2
2,960,541	+		BT2374	0.20	+0.1
2,960,542	-		BT2374	0.20	+0.5
2,960,576	-		BT2374	0.21	-0.7
2,960,747	-		BT2374	0.30	+0.6
2,960,747	-		BT2374	0.30	-1.5
2,960,764	+		BT2374	0.31	-0.1
2,960,764	+		BT2374	0.31	+0.2
2,960,764	+		BT2374	0.31	+0.4
2,960,765	-		BT2374	0.31	+0.2
2,960,765	-		BT2374	0.31	+1.6
2,960,798	-		BT2374	0.33	-0.1
2,960,798	-		BT2374	0.33	-0.1
2,960,801	+		BT2374	0.33	-0.3
2,960,801	+		BT2374	0.33	+0.3
2,960,801	+		BT2374	0.33	-1.7
2,960,802	-		BT2374	0.33	+0.2
2,960,802	-		BT2374	0.33	-0.1
2,960,806	-		BT2374	0.33	-1.1
2,960,836	+		BT2374	0.35	-0.7
2,960,837	-		BT2374	0.35	+2.0
2,960,872	-		BT2374	0.37	-0.9
2,960,941	+		BT2374	0.40	-1.1
2,960,941	+		BT2374	0.40	-1.2
2,960,941	+		BT2374	0.40	-1.5
2,960,941	+		BT2374	0.40	+0.5
2,960,942	-		BT2374	0.40	+0.7
2,960,942	-		BT2374	0.40	-0.8
2,960,942	-		BT2374	0.40	-1.0
2,960,943	+		BT2374	0.40	-0.1
2,960,943	+		BT2374	0.40	-3.8
2,960,943	+		BT2374	0.40	+1.4
2,960,943	+		BT2374	0.40	+0.6
2,960,944	-		BT2374	0.40	-1.3
2,960,983	+		BT2374	0.42	-0.7
2,961,088	+		BT2374	0.48	-3.4
2,961,130	+		BT2374	0.50	-1.9
2,961,133	+		BT2374	0.50	+1.4
2,961,133	+		BT2374	0.50	+0.7
2,961,134	-		BT2374	0.50	+1.5
2,961,142	+		BT2374	0.50	+0.5
2,961,188	-		BT2374	0.53	+1.0
2,961,188	-		BT2374	0.53	-1.1
2,961,188	-		BT2374	0.53	+1.1
2,961,421	+		BT2374	0.65	+0.3
2,961,421	+		BT2374	0.65	-1.1
2,961,421	+		BT2374	0.65	+0.9
2,961,422	-		BT2374	0.65	+0.4
2,961,422	-		BT2374	0.65	-0.1
2,961,440	-		BT2374	0.66	+0.7
2,961,530	+		BT2374	0.70	-0.7
2,961,533	+		BT2374	0.70	-3.2
2,961,537	+		BT2374	0.71	-1.5
2,961,545	-		BT2374	0.71	-0.5
2,961,548	+		BT2374	0.71	-1.7
2,961,548	+		BT2374	0.71	+1.4
2,961,585	+		BT2374	0.73	-2.7
2,961,601	+		BT2374	0.74	-0.0
2,961,688	+		BT2374	0.78	-0.3
2,961,688	+		BT2374	0.78	+0.6
2,961,745	+		BT2374	0.81	+1.0
2,961,765	+		BT2374	0.82	+0.3
2,961,765	+		BT2374	0.82	-0.2
2,961,765	+		BT2374	0.82	+1.1
2,961,843	+		BT2374	0.86	-1.3
2,961,843	+		BT2374	0.86	+1.9
2,961,861	+		BT2374	0.87	+0.2
2,961,868	-		BT2374	0.88	+0.9
2,961,914	+		BT2374	0.90	+1.8
2,961,914	+		BT2374	0.90	-1.4
2,961,926	+				+2.5
2,961,963	-				+0.9
2,961,970	+				-2.1
2,961,970	+				+0.1
2,961,974	-				-0.1
2,962,032	+				+0.4
2,962,091	+				-2.0
2,962,097	+				-0.5
2,962,147	+		BT2375	0.19	+0.3
2,962,171	+		BT2375	0.32	-1.1
2,962,171	+		BT2375	0.32	-1.4
2,962,191	-		BT2375	0.42	+1.5
2,962,234	-		BT2375	0.65	+1.7
2,962,272	-		BT2375	0.84	+0.5
2,962,293	-				-0.3
2,962,364	+				+0.4
2,962,500	+				+1.2
2,962,514	+				+2.1
2,962,529	+				-4.3
2,962,536	+				-0.7
2,962,542	+				+0.8
2,962,543	-				+1.7
2,962,631	-				+0.9
2,962,647	-				-1.6
2,962,648	+				-1.0
2,962,680	-		BT2376	0.14	+0.8
2,962,692	+		BT2376	0.16	+0.2
2,962,694	+		BT2376	0.17	+1.5
2,962,699	+		BT2376	0.18	-1.3
2,962,779	-		BT2376	0.33	+0.5
2,962,779	-		BT2376	0.33	+0.9
2,962,786	-		BT2376	0.34	+1.2
2,962,833	+		BT2376	0.43	+1.1
2,962,833	+		BT2376	0.43	-1.7
2,962,834	-		BT2376	0.43	+1.1
2,962,834	-		BT2376	0.43	-1.7
2,962,871	+		BT2376	0.50	-1.1
2,962,872	-		BT2376	0.50	-1.2
2,962,872	-		BT2376	0.50	-0.3
2,962,877	+		BT2376	0.51	-0.3
2,962,878	-		BT2376	0.51	+0.8
2,962,908	+		BT2376	0.57	+0.2
2,962,936	+		BT2376	0.62	+0.8
2,962,936	+		BT2376	0.62	-3.6
2,962,936	+		BT2376	0.62	-0.9
2,963,004	+		BT2376	0.74	+1.0
2,963,015	+		BT2376	0.77	-2.2
2,963,015	+		BT2376	0.77	-1.1
2,963,015	+		BT2376	0.77	+0.4
2,963,015	+		BT2376	0.77	-2.0
2,963,016	-		BT2376	0.77	+0.1
2,963,026	+		BT2376	0.79	-1.0
2,963,027	-		BT2376	0.79	+0.3
2,963,080	-		BT2376	0.89	+1.4