Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3741 and Pf6N2E2_3742 overlap by 8 nucleotides Pf6N2E2_3742 and Pf6N2E2_3743 are separated by 2 nucleotides Pf6N2E2_3743 and Pf6N2E2_3744 are separated by 3 nucleotides Pf6N2E2_3744 and Pf6N2E2_3745 are separated by 4 nucleotides
Pf6N2E2_3741 - General secretion pathway protein I, at 4,356,848 to 4,357,234
_3741
Pf6N2E2_3742 - General secretion pathway protein H, at 4,357,227 to 4,357,694
_3742
Pf6N2E2_3743 - General secretion pathway protein G, at 4,357,697 to 4,358,152
_3743
Pf6N2E2_3744 - General secretion pathway protein F, at 4,358,156 to 4,359,364
_3744
Pf6N2E2_3745 - General secretion pathway protein E, at 4,359,369 to 4,360,820
_3745
Position (kb) 4358
4359
4360 Strain fitness (log2 ratio) -1
0
1 at 4357.491 kb on + strand, within Pf6N2E2_3742 at 4357.491 kb on + strand, within Pf6N2E2_3742 at 4357.491 kb on + strand, within Pf6N2E2_3742 at 4357.491 kb on + strand, within Pf6N2E2_3742 at 4357.497 kb on + strand, within Pf6N2E2_3742 at 4357.498 kb on - strand, within Pf6N2E2_3742 at 4357.498 kb on - strand, within Pf6N2E2_3742 at 4357.504 kb on + strand, within Pf6N2E2_3742 at 4357.767 kb on + strand, within Pf6N2E2_3743 at 4357.768 kb on - strand, within Pf6N2E2_3743 at 4357.768 kb on - strand, within Pf6N2E2_3743 at 4357.818 kb on + strand, within Pf6N2E2_3743 at 4357.857 kb on + strand, within Pf6N2E2_3743 at 4357.858 kb on - strand, within Pf6N2E2_3743 at 4357.942 kb on - strand, within Pf6N2E2_3743 at 4357.963 kb on - strand, within Pf6N2E2_3743 at 4358.038 kb on + strand, within Pf6N2E2_3743 at 4358.039 kb on - strand, within Pf6N2E2_3743 at 4358.039 kb on - strand, within Pf6N2E2_3743 at 4358.075 kb on - strand, within Pf6N2E2_3743 at 4358.185 kb on + strand at 4358.185 kb on + strand at 4358.186 kb on - strand at 4358.802 kb on + strand, within Pf6N2E2_3744 at 4358.803 kb on - strand, within Pf6N2E2_3744 at 4358.907 kb on + strand, within Pf6N2E2_3744 at 4358.908 kb on - strand, within Pf6N2E2_3744 at 4358.908 kb on - strand, within Pf6N2E2_3744 at 4359.371 kb on - strand at 4359.383 kb on + strand at 4359.547 kb on + strand, within Pf6N2E2_3745 at 4359.547 kb on + strand, within Pf6N2E2_3745 at 4359.547 kb on + strand, within Pf6N2E2_3745 at 4359.547 kb on + strand, within Pf6N2E2_3745 at 4359.547 kb on + strand, within Pf6N2E2_3745 at 4359.547 kb on + strand, within Pf6N2E2_3745 at 4359.547 kb on + strand, within Pf6N2E2_3745 at 4359.548 kb on - strand, within Pf6N2E2_3745 at 4359.548 kb on - strand, within Pf6N2E2_3745 at 4359.548 kb on - strand, within Pf6N2E2_3745 at 4359.548 kb on - strand, within Pf6N2E2_3745 at 4359.548 kb on - strand, within Pf6N2E2_3745 at 4359.548 kb on - strand, within Pf6N2E2_3745 at 4359.548 kb on - strand, within Pf6N2E2_3745 at 4359.551 kb on + strand, within Pf6N2E2_3745 at 4359.552 kb on - strand, within Pf6N2E2_3745 at 4359.552 kb on - strand, within Pf6N2E2_3745 at 4359.651 kb on - strand, within Pf6N2E2_3745 at 4359.667 kb on + strand, within Pf6N2E2_3745 at 4359.667 kb on + strand, within Pf6N2E2_3745 at 4359.667 kb on + strand, within Pf6N2E2_3745 at 4359.667 kb on + strand, within Pf6N2E2_3745 at 4359.668 kb on - strand, within Pf6N2E2_3745 at 4359.668 kb on - strand, within Pf6N2E2_3745 at 4359.668 kb on - strand, within Pf6N2E2_3745 at 4359.668 kb on - strand, within Pf6N2E2_3745 at 4359.668 kb on - strand, within Pf6N2E2_3745 at 4359.745 kb on + strand, within Pf6N2E2_3745 at 4359.745 kb on + strand, within Pf6N2E2_3745 at 4359.745 kb on + strand, within Pf6N2E2_3745 at 4359.745 kb on + strand, within Pf6N2E2_3745 at 4359.745 kb on + strand, within Pf6N2E2_3745 at 4359.745 kb on + strand, within Pf6N2E2_3745 at 4359.746 kb on - strand, within Pf6N2E2_3745 at 4359.746 kb on - strand, within Pf6N2E2_3745 at 4359.746 kb on - strand, within Pf6N2E2_3745 at 4359.874 kb on - strand, within Pf6N2E2_3745 at 4359.874 kb on - strand, within Pf6N2E2_3745 at 4359.874 kb on - strand, within Pf6N2E2_3745 at 4359.988 kb on + strand, within Pf6N2E2_3745 at 4359.989 kb on - strand, within Pf6N2E2_3745 at 4360.054 kb on + strand, within Pf6N2E2_3745 at 4360.055 kb on - strand, within Pf6N2E2_3745 at 4360.055 kb on - strand, within Pf6N2E2_3745 at 4360.251 kb on + strand, within Pf6N2E2_3745 at 4360.251 kb on + strand, within Pf6N2E2_3745
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 4,357,491 + Pf6N2E2_3742 0.56 +0.3 4,357,491 + Pf6N2E2_3742 0.56 +0.2 4,357,491 + Pf6N2E2_3742 0.56 -1.0 4,357,491 + Pf6N2E2_3742 0.56 -0.2 4,357,497 + Pf6N2E2_3742 0.58 +1.1 4,357,498 - Pf6N2E2_3742 0.58 -0.1 4,357,498 - Pf6N2E2_3742 0.58 -0.3 4,357,504 + Pf6N2E2_3742 0.59 -0.1 4,357,767 + Pf6N2E2_3743 0.15 -0.7 4,357,768 - Pf6N2E2_3743 0.16 +0.5 4,357,768 - Pf6N2E2_3743 0.16 +0.8 4,357,818 + Pf6N2E2_3743 0.27 +0.2 4,357,857 + Pf6N2E2_3743 0.35 +0.3 4,357,858 - Pf6N2E2_3743 0.35 +0.4 4,357,942 - Pf6N2E2_3743 0.54 -0.3 4,357,963 - Pf6N2E2_3743 0.58 +0.5 4,358,038 + Pf6N2E2_3743 0.75 +0.8 4,358,039 - Pf6N2E2_3743 0.75 +0.4 4,358,039 - Pf6N2E2_3743 0.75 +0.6 4,358,075 - Pf6N2E2_3743 0.83 +0.2 4,358,185 + +0.1 4,358,185 + -0.2 4,358,186 - +0.1 4,358,802 + Pf6N2E2_3744 0.53 -0.9 4,358,803 - Pf6N2E2_3744 0.54 +0.0 4,358,907 + Pf6N2E2_3744 0.62 -0.5 4,358,908 - Pf6N2E2_3744 0.62 +0.5 4,358,908 - Pf6N2E2_3744 0.62 +0.5 4,359,371 - +0.4 4,359,383 + -0.4 4,359,547 + Pf6N2E2_3745 0.12 +0.0 4,359,547 + Pf6N2E2_3745 0.12 -0.4 4,359,547 + Pf6N2E2_3745 0.12 +0.4 4,359,547 + Pf6N2E2_3745 0.12 +0.1 4,359,547 + Pf6N2E2_3745 0.12 +0.7 4,359,547 + Pf6N2E2_3745 0.12 -0.9 4,359,547 + Pf6N2E2_3745 0.12 +1.5 4,359,548 - Pf6N2E2_3745 0.12 -0.2 4,359,548 - Pf6N2E2_3745 0.12 +0.4 4,359,548 - Pf6N2E2_3745 0.12 +0.8 4,359,548 - Pf6N2E2_3745 0.12 -1.1 4,359,548 - Pf6N2E2_3745 0.12 -0.8 4,359,548 - Pf6N2E2_3745 0.12 +0.6 4,359,548 - Pf6N2E2_3745 0.12 -0.3 4,359,551 + Pf6N2E2_3745 0.13 +1.4 4,359,552 - Pf6N2E2_3745 0.13 +0.2 4,359,552 - Pf6N2E2_3745 0.13 -0.4 4,359,651 - Pf6N2E2_3745 0.19 -0.2 4,359,667 + Pf6N2E2_3745 0.21 -1.3 4,359,667 + Pf6N2E2_3745 0.21 +0.6 4,359,667 + Pf6N2E2_3745 0.21 -0.3 4,359,667 + Pf6N2E2_3745 0.21 +0.4 4,359,668 - Pf6N2E2_3745 0.21 -0.1 4,359,668 - Pf6N2E2_3745 0.21 +0.9 4,359,668 - Pf6N2E2_3745 0.21 +0.3 4,359,668 - Pf6N2E2_3745 0.21 +0.0 4,359,668 - Pf6N2E2_3745 0.21 -0.4 4,359,745 + Pf6N2E2_3745 0.26 +0.9 4,359,745 + Pf6N2E2_3745 0.26 +0.2 4,359,745 + Pf6N2E2_3745 0.26 +0.2 4,359,745 + Pf6N2E2_3745 0.26 +0.8 4,359,745 + Pf6N2E2_3745 0.26 -0.2 4,359,745 + Pf6N2E2_3745 0.26 -0.1 4,359,746 - Pf6N2E2_3745 0.26 +0.6 4,359,746 - Pf6N2E2_3745 0.26 +0.6 4,359,746 - Pf6N2E2_3745 0.26 +0.7 4,359,874 - Pf6N2E2_3745 0.35 +0.3 4,359,874 - Pf6N2E2_3745 0.35 +0.0 4,359,874 - Pf6N2E2_3745 0.35 +0.4 4,359,988 + Pf6N2E2_3745 0.43 -1.0 4,359,989 - Pf6N2E2_3745 0.43 +0.3 4,360,054 + Pf6N2E2_3745 0.47 +0.1 4,360,055 - Pf6N2E2_3745 0.47 +1.1 4,360,055 - Pf6N2E2_3745 0.47 -0.7 4,360,251 + Pf6N2E2_3745 0.61 +0.9 4,360,251 + Pf6N2E2_3745 0.61 +1.0
Or see this region's nucleotide sequence