Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3723

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3722 and Pf6N2E2_3723 overlap by 14 nucleotidesPf6N2E2_3723 and Pf6N2E2_3724 are separated by 10 nucleotidesPf6N2E2_3724 and Pf6N2E2_3725 overlap by 4 nucleotides Pf6N2E2_3722 - FIG064705: cation/hydrogen antiporter, at 4,336,136 to 4,337,293 _3722 Pf6N2E2_3723 - FIG022199: FAD-binding protein, at 4,337,280 to 4,338,527 _3723 Pf6N2E2_3724 - FIG025233: SAM-dependent methyltransferases, at 4,338,538 to 4,339,266 _3724 Pf6N2E2_3725 - FIG085779: Lipoprotein, at 4,339,263 to 4,339,745 _3725 Position (kb) 4337 4338 4339Strain fitness (log2 ratio) -1 0 1at 4336.341 kb on - strand, within Pf6N2E2_3722at 4336.553 kb on + strand, within Pf6N2E2_3722at 4336.553 kb on + strand, within Pf6N2E2_3722at 4336.553 kb on + strand, within Pf6N2E2_3722at 4336.553 kb on + strand, within Pf6N2E2_3722at 4336.553 kb on + strand, within Pf6N2E2_3722at 4336.553 kb on + strand, within Pf6N2E2_3722at 4336.553 kb on + strand, within Pf6N2E2_3722at 4336.554 kb on - strand, within Pf6N2E2_3722at 4336.554 kb on - strand, within Pf6N2E2_3722at 4336.554 kb on - strand, within Pf6N2E2_3722at 4336.554 kb on - strand, within Pf6N2E2_3722at 4336.554 kb on - strand, within Pf6N2E2_3722at 4336.554 kb on - strand, within Pf6N2E2_3722at 4336.554 kb on - strand, within Pf6N2E2_3722at 4336.554 kb on - strand, within Pf6N2E2_3722at 4336.560 kb on - strand, within Pf6N2E2_3722at 4336.560 kb on - strand, within Pf6N2E2_3722at 4336.754 kb on + strand, within Pf6N2E2_3722at 4336.754 kb on + strand, within Pf6N2E2_3722at 4336.754 kb on + strand, within Pf6N2E2_3722at 4336.754 kb on + strand, within Pf6N2E2_3722at 4336.755 kb on - strand, within Pf6N2E2_3722at 4336.908 kb on - strand, within Pf6N2E2_3722at 4336.908 kb on - strand, within Pf6N2E2_3722at 4337.029 kb on - strand, within Pf6N2E2_3722at 4337.029 kb on - strand, within Pf6N2E2_3722at 4337.029 kb on - strand, within Pf6N2E2_3722at 4337.098 kb on + strand, within Pf6N2E2_3722at 4337.180 kb on + strandat 4337.180 kb on + strandat 4337.180 kb on + strandat 4337.180 kb on + strandat 4337.181 kb on - strandat 4337.181 kb on - strandat 4337.181 kb on - strandat 4337.181 kb on - strandat 4337.245 kb on + strandat 4337.245 kb on + strandat 4337.246 kb on - strandat 4337.246 kb on - strandat 4337.246 kb on - strandat 4337.246 kb on - strandat 4337.246 kb on - strandat 4337.246 kb on - strandat 4337.562 kb on - strand, within Pf6N2E2_3723at 4337.739 kb on + strand, within Pf6N2E2_3723at 4337.740 kb on - strand, within Pf6N2E2_3723at 4338.339 kb on + strand, within Pf6N2E2_3723at 4338.339 kb on + strand, within Pf6N2E2_3723at 4338.544 kb on + strandat 4338.545 kb on - strandat 4338.545 kb on - strandat 4338.545 kb on - strandat 4338.559 kb on + strandat 4338.559 kb on + strandat 4338.560 kb on - strandat 4338.560 kb on - strandat 4338.560 kb on - strandat 4338.724 kb on + strand, within Pf6N2E2_3724at 4338.725 kb on - strand, within Pf6N2E2_3724at 4338.953 kb on + strand, within Pf6N2E2_3724at 4339.000 kb on + strand, within Pf6N2E2_3724at 4339.000 kb on + strand, within Pf6N2E2_3724at 4339.000 kb on + strand, within Pf6N2E2_3724at 4339.001 kb on - strand, within Pf6N2E2_3724at 4339.001 kb on - strand, within Pf6N2E2_3724at 4339.069 kb on + strand, within Pf6N2E2_3724

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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4,336,341 - Pf6N2E2_3722 0.18 +0.1
4,336,553 + Pf6N2E2_3722 0.36 +0.2
4,336,553 + Pf6N2E2_3722 0.36 +1.1
4,336,553 + Pf6N2E2_3722 0.36 -1.4
4,336,553 + Pf6N2E2_3722 0.36 +0.9
4,336,553 + Pf6N2E2_3722 0.36 +0.5
4,336,553 + Pf6N2E2_3722 0.36 +0.0
4,336,553 + Pf6N2E2_3722 0.36 +0.5
4,336,554 - Pf6N2E2_3722 0.36 +0.8
4,336,554 - Pf6N2E2_3722 0.36 +0.1
4,336,554 - Pf6N2E2_3722 0.36 +1.4
4,336,554 - Pf6N2E2_3722 0.36 -0.1
4,336,554 - Pf6N2E2_3722 0.36 +0.4
4,336,554 - Pf6N2E2_3722 0.36 -0.3
4,336,554 - Pf6N2E2_3722 0.36 +0.4
4,336,554 - Pf6N2E2_3722 0.36 -0.6
4,336,560 - Pf6N2E2_3722 0.37 -0.3
4,336,560 - Pf6N2E2_3722 0.37 +0.4
4,336,754 + Pf6N2E2_3722 0.53 +0.5
4,336,754 + Pf6N2E2_3722 0.53 -0.4
4,336,754 + Pf6N2E2_3722 0.53 +0.5
4,336,754 + Pf6N2E2_3722 0.53 -0.7
4,336,755 - Pf6N2E2_3722 0.53 -0.2
4,336,908 - Pf6N2E2_3722 0.67 -0.2
4,336,908 - Pf6N2E2_3722 0.67 +0.1
4,337,029 - Pf6N2E2_3722 0.77 -0.3
4,337,029 - Pf6N2E2_3722 0.77 -0.1
4,337,029 - Pf6N2E2_3722 0.77 +0.7
4,337,098 + Pf6N2E2_3722 0.83 -0.2
4,337,180 + +0.5
4,337,180 + +0.4
4,337,180 + -0.1
4,337,180 + +1.1
4,337,181 - +0.2
4,337,181 - +0.1
4,337,181 - +0.4
4,337,181 - -0.2
4,337,245 + +0.2
4,337,245 + +0.5
4,337,246 - +0.6
4,337,246 - -0.0
4,337,246 - -0.2
4,337,246 - +1.5
4,337,246 - -0.2
4,337,246 - -1.0
4,337,562 - Pf6N2E2_3723 0.23 -0.9
4,337,739 + Pf6N2E2_3723 0.37 +0.1
4,337,740 - Pf6N2E2_3723 0.37 -0.7
4,338,339 + Pf6N2E2_3723 0.85 -0.4
4,338,339 + Pf6N2E2_3723 0.85 -0.6
4,338,544 + +0.5
4,338,545 - +0.6
4,338,545 - -0.8
4,338,545 - -0.4
4,338,559 + +0.7
4,338,559 + -0.4
4,338,560 - -0.1
4,338,560 - -0.9
4,338,560 - +0.4
4,338,724 + Pf6N2E2_3724 0.26 +0.1
4,338,725 - Pf6N2E2_3724 0.26 -0.1
4,338,953 + Pf6N2E2_3724 0.57 -0.2
4,339,000 + Pf6N2E2_3724 0.63 +0.6
4,339,000 + Pf6N2E2_3724 0.63 +0.6
4,339,000 + Pf6N2E2_3724 0.63 +0.2
4,339,001 - Pf6N2E2_3724 0.64 -0.1
4,339,001 - Pf6N2E2_3724 0.64 +0.2
4,339,069 + Pf6N2E2_3724 0.73 +0.3

Or see this region's nucleotide sequence