Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS12190

Experiment: R2A with Spectinomycin 0.05 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Spectinomycin 0.05 mg/ml
3,029,125	-		CA265_RS12185	0.38	-0.3
3,029,156	+		CA265_RS12185	0.40	-0.0
3,029,157	-		CA265_RS12185	0.40	-0.3
3,029,166	+		CA265_RS12185	0.41	-0.3
3,029,180	-		CA265_RS12185	0.42	+0.3
3,029,230	-		CA265_RS12185	0.45	+0.5
3,029,241	+		CA265_RS12185	0.45	-0.3
3,029,260	+		CA265_RS12185	0.47	+0.3
3,029,261	-		CA265_RS12185	0.47	+0.1
3,029,279	-		CA265_RS12185	0.48	+0.7
3,029,291	-		CA265_RS12185	0.49	-0.4
3,029,325	-		CA265_RS12185	0.51	+0.3
3,029,373	-		CA265_RS12185	0.54	+1.5
3,029,373	-		CA265_RS12185	0.54	-0.8
3,029,438	+		CA265_RS12185	0.58	+0.3
3,029,503	+		CA265_RS12185	0.62	+0.9
3,029,530	+		CA265_RS12185	0.64	-0.8
3,029,566	+		CA265_RS12185	0.66	+0.4
3,029,588	-		CA265_RS12185	0.67	+0.1
3,029,592	+		CA265_RS12185	0.68	+0.2
3,029,593	-		CA265_RS12185	0.68	-0.0
3,029,593	-		CA265_RS12185	0.68	+0.2
3,029,595	-		CA265_RS12185	0.68	-0.2
3,029,614	-		CA265_RS12185	0.69	-0.6
3,029,621	-		CA265_RS12185	0.70	-0.0
3,029,635	+		CA265_RS12185	0.70	-0.0
3,029,656	+		CA265_RS12185	0.72	-0.7
3,029,687	-		CA265_RS12185	0.74	-0.4
3,029,737	+		CA265_RS12185	0.77	-0.4
3,029,785	+		CA265_RS12185	0.80	-1.0
3,029,889	+		CA265_RS12185	0.87	-0.5
3,029,890	-		CA265_RS12185	0.87	+0.0
3,029,929	+		CA265_RS12185	0.89	+0.4
3,029,933	+		CA265_RS12185	0.89	-0.2
3,029,948	-				-0.4
3,029,962	+				-0.0
3,029,993	+				-1.0
3,030,014	-				+1.0
3,030,064	+				+0.1
3,030,072	-				+0.4
3,030,079	-				+0.3
3,030,126	+				-0.2
3,030,158	+				-0.6
3,030,159	-				+0.5
3,030,204	+				+0.0
3,030,218	-				-0.2
3,030,238	+				-0.5
3,030,238	+				-0.4
3,030,269	+				+3.0
3,030,293	+				-1.1
3,030,341	+				+0.7
3,030,349	+				+0.0
3,030,350	-				-0.6
3,030,350	-				+0.3
3,030,353	+				+0.8
3,030,354	-				-0.0
3,030,355	+				-0.4
3,030,390	-				+0.5
3,030,416	+				-0.3
3,030,437	+				+0.4
3,030,438	-				+1.0
3,030,467	+		CA265_RS12190	0.10	+0.8
3,030,514	+		CA265_RS12190	0.12	-0.6
3,030,515	-		CA265_RS12190	0.12	-0.2
3,030,534	+		CA265_RS12190	0.12	-2.2
3,030,570	+		CA265_RS12190	0.13	-0.7
3,030,596	+		CA265_RS12190	0.14	-0.1
3,030,751	+		CA265_RS12190	0.19	+0.8
3,030,768	+		CA265_RS12190	0.19	-0.2
3,030,771	+		CA265_RS12190	0.19	-1.5
3,030,773	+		CA265_RS12190	0.19	+0.7
3,030,773	+		CA265_RS12190	0.19	-1.3
3,030,773	+		CA265_RS12190	0.19	+0.3
3,030,788	-		CA265_RS12190	0.20	-0.4
3,030,818	+		CA265_RS12190	0.21	-0.1
3,030,818	+		CA265_RS12190	0.21	-0.2
3,030,819	-		CA265_RS12190	0.21	-0.1
3,030,835	-		CA265_RS12190	0.21	-0.2
3,030,879	-		CA265_RS12190	0.22	-0.2
3,030,879	-		CA265_RS12190	0.22	-1.3
3,030,959	+		CA265_RS12190	0.25	-0.0
3,030,962	-		CA265_RS12190	0.25	-0.1
3,030,965	-		CA265_RS12190	0.25	+0.4
3,030,970	-		CA265_RS12190	0.25	+0.4
3,031,019	+		CA265_RS12190	0.27	-0.2
3,031,036	+		CA265_RS12190	0.27	+1.3
3,031,040	+		CA265_RS12190	0.27	-0.1
3,031,058	+		CA265_RS12190	0.28	-0.1
3,031,059	-		CA265_RS12190	0.28	-0.4
3,031,100	+		CA265_RS12190	0.29	-1.2
3,031,143	-		CA265_RS12190	0.30	+0.8
3,031,173	-		CA265_RS12190	0.31	-0.4
3,031,192	+		CA265_RS12190	0.32	-0.3
3,031,192	+		CA265_RS12190	0.32	+1.3
3,031,213	-		CA265_RS12190	0.32	-1.2
3,031,222	+		CA265_RS12190	0.33	-0.7
3,031,223	-		CA265_RS12190	0.33	+0.3
3,031,223	-		CA265_RS12190	0.33	-1.0
3,031,233	+		CA265_RS12190	0.33	-0.8
3,031,319	+		CA265_RS12190	0.35	-1.0
3,031,329	-		CA265_RS12190	0.36	+0.1
3,031,340	+		CA265_RS12190	0.36	-0.7
3,031,341	-		CA265_RS12190	0.36	-0.1
3,031,341	-		CA265_RS12190	0.36	-0.3
3,031,431	-		CA265_RS12190	0.39	-0.2
3,031,431	-		CA265_RS12190	0.39	-0.1
3,031,462	-		CA265_RS12190	0.40	+0.9
3,031,563	-		CA265_RS12190	0.43	+0.1
3,031,574	+		CA265_RS12190	0.43	-0.5
3,031,592	+		CA265_RS12190	0.43	-1.1
3,031,592	+		CA265_RS12190	0.43	-0.6
3,031,641	+		CA265_RS12190	0.45	-1.0
3,031,670	-		CA265_RS12190	0.46	+0.3
3,031,730	+		CA265_RS12190	0.47	-1.2
3,031,783	-		CA265_RS12190	0.49	-0.1
3,031,807	-		CA265_RS12190	0.50	+0.2
3,031,841	+		CA265_RS12190	0.51	-0.3
3,031,866	+		CA265_RS12190	0.51	+0.5
3,031,956	+		CA265_RS12190	0.54	-0.3
3,031,956	+		CA265_RS12190	0.54	-0.2
3,031,964	+		CA265_RS12190	0.54	-0.7
3,031,991	+		CA265_RS12190	0.55	-1.0
3,031,994	+		CA265_RS12190	0.55	+0.7
3,031,995	-		CA265_RS12190	0.55	+0.5
3,031,999	-		CA265_RS12190	0.55	-0.3
3,032,017	+		CA265_RS12190	0.56	-0.7
3,032,041	+		CA265_RS12190	0.57	-0.3
3,032,084	-		CA265_RS12190	0.58	+0.2
3,032,088	+		CA265_RS12190	0.58	-0.1
3,032,146	-		CA265_RS12190	0.60	+0.1
3,032,210	+		CA265_RS12190	0.61	+0.4
3,032,211	-		CA265_RS12190	0.62	-0.2
3,032,212	+		CA265_RS12190	0.62	-0.4
3,032,212	+		CA265_RS12190	0.62	+0.7
3,032,264	+		CA265_RS12190	0.63	+0.1
3,032,265	-		CA265_RS12190	0.63	-1.4
3,032,331	-		CA265_RS12190	0.65	-1.1
3,032,331	-		CA265_RS12190	0.65	-0.3
3,032,351	+		CA265_RS12190	0.66	+0.9
3,032,355	+		CA265_RS12190	0.66	+0.7
3,032,366	-		CA265_RS12190	0.66	-0.4
3,032,369	+		CA265_RS12190	0.66	+0.6
3,032,420	+		CA265_RS12190	0.68	+0.0
3,032,467	-		CA265_RS12190	0.69	-0.2
3,032,467	-		CA265_RS12190	0.69	-0.4
3,032,475	+		CA265_RS12190	0.69	-0.1
3,032,523	+		CA265_RS12190	0.71	-0.7
3,032,524	-		CA265_RS12190	0.71	+0.4
3,032,535	-		CA265_RS12190	0.71	+0.4
3,032,544	-		CA265_RS12190	0.71	+1.3
3,032,586	+		CA265_RS12190	0.72	+0.3
3,032,587	-		CA265_RS12190	0.73	-1.1
3,032,587	-		CA265_RS12190	0.73	-0.2
3,032,599	+		CA265_RS12190	0.73	-0.1
3,032,599	+		CA265_RS12190	0.73	-0.1
3,032,599	+		CA265_RS12190	0.73	-0.9
3,032,604	-		CA265_RS12190	0.73	-1.0
3,032,649	+		CA265_RS12190	0.74	-0.3
3,032,653	-		CA265_RS12190	0.74	+0.3
3,032,656	+		CA265_RS12190	0.75	-1.1
3,032,679	+		CA265_RS12190	0.75	+0.6
3,032,679	+		CA265_RS12190	0.75	-0.4
3,032,763	-		CA265_RS12190	0.78	-0.3
3,032,770	-		CA265_RS12190	0.78	-0.8
3,032,834	+		CA265_RS12190	0.80	+0.5
3,032,835	-		CA265_RS12190	0.80	+0.4
3,032,836	+		CA265_RS12190	0.80	-0.5
3,032,837	-		CA265_RS12190	0.80	+0.9
3,032,892	+		CA265_RS12190	0.81	-0.0
3,032,893	-		CA265_RS12190	0.81	-0.1
3,032,914	-		CA265_RS12190	0.82	+0.2
3,032,918	+		CA265_RS12190	0.82	+0.6
3,032,954	-		CA265_RS12190	0.83	+0.2
3,032,974	+		CA265_RS12190	0.84	+0.1
3,032,974	+		CA265_RS12190	0.84	+0.2
3,032,975	-		CA265_RS12190	0.84	-0.5
3,032,975	-		CA265_RS12190	0.84	-0.5
3,032,975	-		CA265_RS12190	0.84	+0.1
3,032,980	-		CA265_RS12190	0.84	-0.6
3,032,985	+		CA265_RS12190	0.84	-1.2
3,033,006	+		CA265_RS12190	0.85	-1.1
3,033,038	+		CA265_RS12190	0.86	+0.1
3,033,039	-		CA265_RS12190	0.86	-0.4
3,033,161	+		CA265_RS12190	0.89	+0.4
3,033,162	-		CA265_RS12190	0.89	+0.2
3,033,205	+				+1.1
3,033,205	+				+2.1
3,033,205	+				-1.6
3,033,206	-				+0.5
3,033,206	-				+0.3
3,033,212	+				-1.5
3,033,249	+				-1.0
3,033,308	+				-1.5
3,033,346	+				+0.6
3,033,346	+				-0.9
3,033,347	-				+0.3
3,033,350	+				-0.0
3,033,351	-				-0.3
3,033,427	-				+0.0
3,033,571	+				-1.6
3,033,604	+				+0.7
3,033,691	+				+0.4
3,033,696	+				+0.2
3,033,696	+				+0.1
3,033,697	-				+0.6
3,033,716	+				+0.6
3,033,716	+				+0.3
3,033,717	-				-0.6
3,033,777	+				+0.2
3,033,777	+				+0.2
3,033,819	+		CA265_RS12195	0.13	-0.2
3,033,892	+		CA265_RS12195	0.20	-0.1
3,033,904	+		CA265_RS12195	0.21	+0.5
3,033,914	+		CA265_RS12195	0.21	-1.9
3,033,915	-		CA265_RS12195	0.21	-2.7
3,033,915	-		CA265_RS12195	0.21	+0.3
3,033,922	+		CA265_RS12195	0.22	-0.2
3,033,923	-		CA265_RS12195	0.22	+0.6
3,034,102	+		CA265_RS12195	0.37	-0.3
3,034,108	-		CA265_RS12195	0.38	+0.6
3,034,108	-		CA265_RS12195	0.38	+0.7
3,034,122	+		CA265_RS12195	0.39	+0.4
3,034,163	-		CA265_RS12195	0.42	+0.4
3,034,280	-		CA265_RS12195	0.52	+0.3
3,034,280	-		CA265_RS12195	0.52	-0.4
3,034,280	-		CA265_RS12195	0.52	-1.1
3,034,284	+		CA265_RS12195	0.53	+0.4
3,034,366	-		CA265_RS12195	0.60	-0.3
3,034,387	+		CA265_RS12195	0.61	+0.5
3,034,388	-		CA265_RS12195	0.62	-0.4
3,034,438	+		CA265_RS12195	0.66	+0.2
3,034,482	+		CA265_RS12195	0.69	+0.6
3,034,488	+		CA265_RS12195	0.70	+0.4
3,034,488	+		CA265_RS12195	0.70	-0.1
3,034,517	+		CA265_RS12195	0.72	+0.2