Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS11340

Experiment: R2A with Spectinomycin 0.05 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Spectinomycin 0.05 mg/ml
2,812,320	+		CA265_RS11335	0.89	+0.5
2,812,321	-		CA265_RS11335	0.89	+0.7
2,812,322	+		CA265_RS11335	0.89	+0.3
2,812,323	-		CA265_RS11335	0.89	-0.3
2,812,434	+				-0.3
2,812,489	+				+0.1
2,812,490	-				+0.3
2,812,508	-				+0.1
2,812,625	+				+0.9
2,812,625	+				+0.2
2,812,626	-				+0.2
2,812,914	-				-1.4
2,812,941	-				+0.4
2,813,000	+				-0.2
2,813,235	-				-1.3
2,813,235	-				-0.4
2,813,244	-				-0.2
2,813,254	-				-0.1
2,813,279	+				+0.3
2,813,281	+				+1.3
2,813,281	+				-0.1
2,813,302	+				+0.0
2,813,348	+				-0.3
2,813,349	-				-0.0
2,813,356	+				-1.1
2,813,368	-				-0.1
2,813,368	-				+0.3
2,813,531	-		CA265_RS11340	0.14	-0.2
2,813,532	+		CA265_RS11340	0.14	-0.8
2,813,576	+		CA265_RS11340	0.17	-0.8
2,813,596	+		CA265_RS11340	0.18	-0.3
2,813,604	+		CA265_RS11340	0.18	-0.4
2,813,633	+		CA265_RS11340	0.20	+0.7
2,813,890	-		CA265_RS11340	0.37	-0.6
2,813,903	-		CA265_RS11340	0.38	-0.6
2,813,908	-		CA265_RS11340	0.38	+0.4
2,813,953	-		CA265_RS11340	0.41	-1.3
2,813,987	-		CA265_RS11340	0.43	-1.1
2,813,996	+		CA265_RS11340	0.43	-0.0
2,813,997	-		CA265_RS11340	0.44	+0.3
2,814,051	-		CA265_RS11340	0.47	-0.1
2,814,073	+		CA265_RS11340	0.48	-0.1
2,814,087	+		CA265_RS11340	0.49	-0.6
2,814,087	+		CA265_RS11340	0.49	+0.3
2,814,093	-		CA265_RS11340	0.50	-0.8
2,814,093	-		CA265_RS11340	0.50	+0.6
2,814,098	-		CA265_RS11340	0.50	+0.6
2,814,110	+		CA265_RS11340	0.51	-2.1
2,814,136	+		CA265_RS11340	0.52	-0.4
2,814,144	-		CA265_RS11340	0.53	-0.6
2,814,212	-		CA265_RS11340	0.57	+1.1
2,814,215	-		CA265_RS11340	0.57	+0.1
2,814,254	-		CA265_RS11340	0.60	-0.0
2,814,254	-				+0.8
2,814,308	+		CA265_RS11340	0.63	-0.1
2,814,310	+		CA265_RS11340	0.64	-0.1
2,814,310	+		CA265_RS11340	0.64	-0.8
2,814,311	-		CA265_RS11340	0.64	-1.4
2,814,330	-		CA265_RS11340	0.65	+0.9
2,814,352	-		CA265_RS11340	0.66	-0.3
2,814,352	-		CA265_RS11340	0.66	+0.9
2,814,354	-		CA265_RS11340	0.66	-0.9
2,814,502	-		CA265_RS11340	0.76	-0.3
2,814,520	+		CA265_RS11340	0.77	-0.6
2,814,551	+				+0.3
2,814,551	+		CA265_RS11340	0.79	-0.7
2,814,604	+		CA265_RS11340	0.82	-0.3
2,814,661	+		CA265_RS11340	0.86	-0.1
2,814,664	+		CA265_RS11340	0.86	-0.2
2,814,685	+		CA265_RS11340	0.88	+0.1
2,814,685	+		CA265_RS11340	0.88	-0.9
2,814,686	-		CA265_RS11340	0.88	-0.6
2,814,716	-		CA265_RS11340	0.90	-1.0
2,814,719	-		CA265_RS11340	0.90	-2.4
2,814,761	-				-0.6
2,814,786	+				-2.3
2,814,787	-				+0.4
2,814,788	+				+1.0
2,814,788	+				-0.1
2,814,789	-				+0.6
2,814,820	+				+0.5
2,814,861	+				-0.2
2,814,861	+				+0.8
2,814,862	-				+1.3
2,814,907	-				-1.6
2,815,000	-				-0.8
2,815,007	+				+0.1
2,815,050	-				-1.1
2,815,138	-				-0.4
2,815,182	+				+0.9
2,815,217	+		CA265_RS11345	0.13	+0.5
2,815,252	-		CA265_RS11345	0.17	+0.3
2,815,293	-		CA265_RS11345	0.21	-0.2
2,815,335	-		CA265_RS11345	0.26	+0.2
2,815,372	-		CA265_RS11345	0.30	-0.3
2,815,419	+		CA265_RS11345	0.35	-0.0
2,815,537	+		CA265_RS11345	0.48	+0.1
2,815,569	+		CA265_RS11345	0.52	-0.6
2,815,570	-		CA265_RS11345	0.52	+0.7
2,815,590	+		CA265_RS11345	0.54	+0.4
2,815,631	+		CA265_RS11345	0.58	-0.2
2,815,632	-		CA265_RS11345	0.58	+0.4
2,815,767	+		CA265_RS11345	0.73	+0.7