Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS09090

Experiment: R2A with Spectinomycin 0.05 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Spectinomycin 0.05 mg/ml
2,262,958	+				+0.2
2,262,958	+				+0.6
2,262,958	+				-0.2
2,262,959	-				+0.7
2,262,982	-				+0.9
2,262,986	-				+0.1
2,263,081	-		CA265_RS09080	0.40	+1.6
2,263,144	+		CA265_RS09080	0.61	-0.4
2,263,145	-		CA265_RS09080	0.62	-0.2
2,263,159	-		CA265_RS09080	0.66	-1.2
2,263,293	+				+0.2
2,263,293	+				+0.5
2,263,323	-		CA265_RS09085	0.11	-0.0
2,263,337	-		CA265_RS09085	0.13	+0.1
2,263,376	+		CA265_RS09085	0.19	+0.1
2,263,423	+		CA265_RS09085	0.26	+0.1
2,263,455	-		CA265_RS09085	0.31	-0.6
2,263,585	+		CA265_RS09085	0.52	+0.1
2,263,586	-		CA265_RS09085	0.52	-0.5
2,263,651	+		CA265_RS09085	0.62	+0.5
2,263,651	+		CA265_RS09085	0.62	+0.3
2,263,652	-		CA265_RS09085	0.62	-0.0
2,263,669	-		CA265_RS09085	0.65	+0.5
2,263,701	-		CA265_RS09085	0.70	+0.7
2,263,795	+				+1.6
2,263,795	+		CA265_RS09085	0.85	-0.1
2,263,796	-		CA265_RS09085	0.85	+0.1
2,263,796	-		CA265_RS09085	0.85	+1.6
2,263,796	-		CA265_RS09085	0.85	+0.4
2,263,811	-		CA265_RS09085	0.87	+0.2
2,263,896	-				-0.4
2,263,896	-				+1.2
2,263,897	+				-0.0
2,263,906	-				+0.8
2,263,994	-				+1.2
2,264,009	-				-0.0
2,264,012	+				-1.4
2,264,012	+				+1.2
2,264,031	-				-0.1
2,264,060	+				-0.4
2,264,140	-				+0.2
2,264,167	+				+3.8
2,264,173	-				-0.4
2,264,278	+		CA265_RS09090	0.14	+0.1
2,264,327	-		CA265_RS09090	0.16	-0.2
2,264,365	-		CA265_RS09090	0.18	+0.5
2,264,435	-		CA265_RS09090	0.20	+0.2
2,264,436	+		CA265_RS09090	0.21	+0.2
2,264,546	-		CA265_RS09090	0.25	-0.5
2,264,546	-		CA265_RS09090	0.25	+0.5
2,264,634	-		CA265_RS09090	0.28	+0.5
2,264,783	-		CA265_RS09090	0.35	-1.3
2,264,859	+		CA265_RS09090	0.38	+0.3
2,264,880	+		CA265_RS09090	0.38	+0.2
2,264,921	+		CA265_RS09090	0.40	-0.4
2,264,921	+		CA265_RS09090	0.40	+0.1
2,265,029	+		CA265_RS09090	0.44	+0.2
2,265,030	-		CA265_RS09090	0.44	+0.4
2,265,035	-		CA265_RS09090	0.45	-0.1
2,265,053	-		CA265_RS09090	0.45	+0.3
2,265,094	+		CA265_RS09090	0.47	+0.4
2,265,106	+		CA265_RS09090	0.48	-0.1
2,265,133	+		CA265_RS09090	0.49	+0.2
2,265,163	+		CA265_RS09090	0.50	+0.4
2,265,164	-		CA265_RS09090	0.50	+0.6
2,265,199	+		CA265_RS09090	0.51	-0.7
2,265,199	+		CA265_RS09090	0.51	+1.2
2,265,371	+		CA265_RS09090	0.58	-0.6
2,265,404	+		CA265_RS09090	0.60	+0.5
2,265,416	+		CA265_RS09090	0.60	+0.1
2,265,433	+		CA265_RS09090	0.61	-0.5
2,265,442	+		CA265_RS09090	0.61	+0.6
2,265,443	-		CA265_RS09090	0.61	-0.3
2,265,478	+		CA265_RS09090	0.63	+0.1
2,265,478	+		CA265_RS09090	0.63	+0.1
2,265,509	+		CA265_RS09090	0.64	+1.2
2,265,509	+		CA265_RS09090	0.64	+0.6
2,265,509	+		CA265_RS09090	0.64	+0.7
2,265,637	-		CA265_RS09090	0.69	-0.9
2,265,641	+		CA265_RS09090	0.69	+0.2
2,265,641	+		CA265_RS09090	0.69	+0.6
2,265,683	-		CA265_RS09090	0.71	+0.6
2,265,888	-		CA265_RS09090	0.79	+0.4
2,265,934	+		CA265_RS09090	0.81	-1.0
2,265,934	+		CA265_RS09090	0.81	+1.1
2,265,934	+		CA265_RS09090	0.81	-0.9
2,265,935	-		CA265_RS09090	0.81	-0.3
2,265,935	-		CA265_RS09090	0.81	-0.8
2,265,954	-		CA265_RS09090	0.82	-0.2
2,266,003	+		CA265_RS09090	0.84	+0.4
2,266,106	+		CA265_RS09090	0.88	+0.0
2,266,195	+				-0.6
2,266,196	-				-0.3
2,266,218	-				-0.3
2,266,348	+				+0.1
2,266,413	+				+0.3
2,266,475	+				+0.1
2,266,521	+				+0.6
2,266,522	-				+0.5
2,266,712	+				-0.1
2,266,713	-				-0.0
2,266,738	+				-0.4
2,266,778	-				-0.5
2,266,778	-				+0.7
2,266,778	-				-0.2
2,266,807	+				-0.3
2,266,866	-		CA265_RS09095	0.11	+0.2
2,266,920	-		CA265_RS09095	0.14	+0.5
2,266,928	-		CA265_RS09095	0.15	-0.7
2,267,049	+		CA265_RS09095	0.22	+0.2
2,267,049	+		CA265_RS09095	0.22	+0.0
2,267,071	+		CA265_RS09095	0.24	-0.4
2,267,071	+		CA265_RS09095	0.24	+0.1
2,267,072	-		CA265_RS09095	0.24	-0.3
2,267,074	-		CA265_RS09095	0.24	+1.0
2,267,150	-		CA265_RS09095	0.29	+0.4
2,267,232	-		CA265_RS09095	0.34	+0.3
2,267,295	-		CA265_RS09095	0.38	-0.2
2,267,326	-		CA265_RS09095	0.40	+1.2