Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS07970

Experiment: R2A with Spectinomycin 0.05 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Spectinomycin 0.05 mg/ml
1,987,115	-		CA265_RS07965	0.21	-1.0
1,987,120	+		CA265_RS07965	0.22	-0.5
1,987,181	-		CA265_RS07965	0.27	+0.5
1,987,182	+		CA265_RS07965	0.27	-0.5
1,987,183	-		CA265_RS07965	0.27	-0.1
1,987,198	+		CA265_RS07965	0.29	+0.0
1,987,220	-		CA265_RS07965	0.31	+0.6
1,987,373	-		CA265_RS07965	0.45	-1.2
1,987,375	-		CA265_RS07965	0.45	-2.0
1,987,406	-		CA265_RS07965	0.48	+0.5
1,987,438	+		CA265_RS07965	0.51	-0.4
1,987,438	+		CA265_RS07965	0.51	+0.9
1,987,522	+		CA265_RS07965	0.59	+0.4
1,987,620	+		CA265_RS07965	0.68	-1.0
1,987,651	-		CA265_RS07965	0.71	+0.1
1,987,654	+		CA265_RS07965	0.71	+0.4
1,987,725	+		CA265_RS07965	0.77	+0.4
1,987,726	-		CA265_RS07965	0.77	-0.1
1,987,726	-		CA265_RS07965	0.77	-0.1
1,987,726	-		CA265_RS07965	0.77	-0.5
1,987,758	+		CA265_RS07965	0.80	-0.2
1,987,761	+		CA265_RS07965	0.81	-0.4
1,987,762	-		CA265_RS07965	0.81	+0.2
1,987,784	-		CA265_RS07965	0.83	-0.6
1,987,827	+		CA265_RS07965	0.87	-0.6
1,987,827	+		CA265_RS07965	0.87	+0.5
1,987,828	-		CA265_RS07965	0.87	-0.2
1,987,828	-		CA265_RS07965	0.87	+0.4
1,987,902	-				+0.5
1,987,905	+				+0.4
1,987,905	+				+0.9
1,987,910	-				-0.1
1,987,953	+				-0.3
1,988,003	+				-0.2
1,988,003	+				-0.7
1,988,180	-				-0.2
1,988,202	+		CA265_RS07970	0.11	+0.3
1,988,209	-		CA265_RS07970	0.11	+0.8
1,988,240	-		CA265_RS07970	0.14	+0.3
1,988,274	+		CA265_RS07970	0.17	+1.0
1,988,282	-		CA265_RS07970	0.18	+0.2
1,988,286	-		CA265_RS07970	0.18	+0.2
1,988,286	-		CA265_RS07970	0.18	+0.1
1,988,294	+		CA265_RS07970	0.19	+0.7
1,988,295	-		CA265_RS07970	0.19	+0.3
1,988,409	+		CA265_RS07970	0.29	+0.7
1,988,410	-		CA265_RS07970	0.30	+0.7
1,988,413	+		CA265_RS07970	0.30	+0.7
1,988,427	-		CA265_RS07970	0.31	+0.3
1,988,431	-		CA265_RS07970	0.32	-0.5
1,988,454	+		CA265_RS07970	0.34	+0.1
1,988,501	+		CA265_RS07970	0.38	+0.1
1,988,502	-		CA265_RS07970	0.38	+0.7
1,988,585	+		CA265_RS07970	0.46	+0.2
1,988,627	+		CA265_RS07970	0.49	+0.6
1,988,627	+		CA265_RS07970	0.49	-0.3
1,988,628	-		CA265_RS07970	0.50	+0.2
1,988,654	-		CA265_RS07970	0.52	+0.5
1,988,654	-		CA265_RS07970	0.52	-0.5
1,988,662	-		CA265_RS07970	0.53	+1.2
1,988,678	+		CA265_RS07970	0.54	-1.5
1,988,678	+		CA265_RS07970	0.54	+0.1
1,988,679	-		CA265_RS07970	0.54	+0.1
1,988,720	-		CA265_RS07970	0.58	+0.2
1,988,761	+		CA265_RS07970	0.62	+0.7
1,988,785	+		CA265_RS07970	0.64	+0.0
1,988,790	-		CA265_RS07970	0.64	+0.0
1,988,793	+		CA265_RS07970	0.65	-0.6
1,988,794	-		CA265_RS07970	0.65	+0.0
1,988,800	+		CA265_RS07970	0.65	-0.6
1,988,803	+		CA265_RS07970	0.66	-0.6
1,988,823	+		CA265_RS07970	0.67	-1.3
1,988,882	-		CA265_RS07970	0.73	+0.1
1,988,995	+		CA265_RS07970	0.83	-1.4
1,988,995	+		CA265_RS07970	0.83	-0.1
1,988,995	+		CA265_RS07970	0.83	+0.9
1,989,018	+		CA265_RS07970	0.85	+0.8
1,989,038	-		CA265_RS07970	0.87	+0.4
1,989,040	-		CA265_RS07970	0.87	+0.9
1,989,119	-				-0.2
1,989,167	-				-0.4
1,989,293	-				-0.6
1,989,321	-				+1.1
1,989,355	+				-0.1
1,989,428	+				+0.8
1,989,465	+				-0.3
1,989,466	-				-1.6
1,989,466	-				+1.2
1,989,466	-				+0.4
1,989,472	-				-0.2
1,989,543	-				-0.0
1,989,565	-		CA265_RS07975	0.10	+0.7
1,989,607	+		CA265_RS07975	0.14	-0.9
1,989,729	+		CA265_RS07975	0.22	+0.1
1,989,771	+		CA265_RS07975	0.25	-0.2
1,989,771	+		CA265_RS07975	0.25	-0.5
1,989,771	+		CA265_RS07975	0.25	+1.1
1,989,772	-		CA265_RS07975	0.26	+0.5
1,989,772	-		CA265_RS07975	0.26	-1.0
1,989,777	-		CA265_RS07975	0.26	+0.4
1,989,828	+		CA265_RS07975	0.30	-0.6
1,989,829	-		CA265_RS07975	0.30	-0.1
1,989,861	-		CA265_RS07975	0.32	+0.8
1,989,898	-		CA265_RS07975	0.35	-0.3
1,989,943	-		CA265_RS07975	0.38	+0.4
1,990,029	+		CA265_RS07975	0.44	-0.3
1,990,030	-		CA265_RS07975	0.44	-1.7
1,990,036	+				-0.8
1,990,037	-		CA265_RS07975	0.45	+0.1
1,990,072	-		CA265_RS07975	0.47	-0.2
1,990,077	-		CA265_RS07975	0.48	-0.0
1,990,077	-		CA265_RS07975	0.48	+0.2
1,990,079	-		CA265_RS07975	0.48	+0.2
1,990,082	+		CA265_RS07975	0.48	-0.1
1,990,102	-		CA265_RS07975	0.50	-0.4
1,990,154	+		CA265_RS07975	0.53	-0.0
1,990,158	+		CA265_RS07975	0.54	+0.0
1,990,159	-		CA265_RS07975	0.54	+0.1
1,990,159	-		CA265_RS07975	0.54	+0.2