Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03065

Experiment: R2A with Spectinomycin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03055 and CA265_RS03060 overlap by 1 nucleotidesCA265_RS03060 and CA265_RS03065 are separated by 238 nucleotidesCA265_RS03065 and CA265_RS03070 are separated by 64 nucleotidesCA265_RS03070 and CA265_RS03075 are separated by 9 nucleotides CA265_RS03055: CA265_RS03055 - two-component sensor histidine kinase, at 758,275 to 759,627 _RS03055 CA265_RS03060: CA265_RS03060 - DNA-binding response regulator, at 759,627 to 760,304 _RS03060 CA265_RS03065: CA265_RS03065 - hypothetical protein, at 760,543 to 761,079 _RS03065 CA265_RS03070: CA265_RS03070 - sec-independent protein translocase TatC, at 761,144 to 761,539 _RS03070 CA265_RS03075: CA265_RS03075 - hypothetical protein, at 761,549 to 761,974 _RS03075 Position (kb) 760 761 762Strain fitness (log2 ratio) -2 -1 0 1 2at 759.576 kb on + strandat 759.577 kb on - strandat 759.577 kb on - strandat 759.644 kb on + strandat 759.712 kb on + strand, within CA265_RS03060at 759.712 kb on + strand, within CA265_RS03060at 759.820 kb on + strand, within CA265_RS03060at 759.821 kb on - strand, within CA265_RS03060at 760.008 kb on + strand, within CA265_RS03060at 760.059 kb on - strand, within CA265_RS03060at 760.076 kb on + strand, within CA265_RS03060at 760.077 kb on - strand, within CA265_RS03060at 760.079 kb on + strand, within CA265_RS03060at 760.080 kb on - strand, within CA265_RS03060at 760.080 kb on - strand, within CA265_RS03060at 760.080 kb on - strand, within CA265_RS03060at 760.082 kb on + strand, within CA265_RS03060at 760.082 kb on + strand, within CA265_RS03060at 760.083 kb on - strand, within CA265_RS03060at 760.107 kb on - strand, within CA265_RS03060at 760.143 kb on + strand, within CA265_RS03060at 760.203 kb on + strand, within CA265_RS03060at 760.219 kb on - strand, within CA265_RS03060at 760.220 kb on + strand, within CA265_RS03060at 760.266 kb on + strandat 760.267 kb on - strandat 760.287 kb on + strandat 760.296 kb on + strandat 760.296 kb on + strandat 760.317 kb on - strandat 760.419 kb on - strandat 760.453 kb on - strandat 760.473 kb on - strandat 760.473 kb on - strandat 760.477 kb on + strandat 760.478 kb on - strandat 760.525 kb on + strandat 760.641 kb on + strand, within CA265_RS03065at 760.765 kb on + strand, within CA265_RS03065at 760.777 kb on - strand, within CA265_RS03065at 760.783 kb on + strand, within CA265_RS03065at 760.839 kb on + strand, within CA265_RS03065at 760.840 kb on - strand, within CA265_RS03065at 760.878 kb on + strand, within CA265_RS03065at 760.993 kb on - strand, within CA265_RS03065at 761.001 kb on + strand, within CA265_RS03065at 761.020 kb on + strand, within CA265_RS03065at 761.021 kb on - strand, within CA265_RS03065at 761.099 kb on + strandat 761.236 kb on + strand, within CA265_RS03070at 761.236 kb on + strand, within CA265_RS03070at 761.324 kb on + strand, within CA265_RS03070at 761.357 kb on - strand, within CA265_RS03070at 761.359 kb on - strand, within CA265_RS03070at 761.427 kb on - strand, within CA265_RS03070at 761.447 kb on + strand, within CA265_RS03070at 761.458 kb on + strand, within CA265_RS03070at 761.468 kb on - strand, within CA265_RS03070at 761.492 kb on - strand, within CA265_RS03070at 761.492 kb on - strand, within CA265_RS03070at 761.509 kb on + strandat 761.510 kb on - strandat 761.547 kb on + strandat 761.547 kb on + strandat 761.548 kb on - strandat 761.608 kb on + strand, within CA265_RS03075at 761.609 kb on + strand, within CA265_RS03075at 761.610 kb on - strand, within CA265_RS03075at 761.610 kb on - strand, within CA265_RS03075at 761.610 kb on - strand, within CA265_RS03075at 761.626 kb on + strand, within CA265_RS03075at 761.626 kb on + strand, within CA265_RS03075at 761.631 kb on - strand, within CA265_RS03075at 761.632 kb on + strand, within CA265_RS03075at 761.632 kb on + strand, within CA265_RS03075at 761.632 kb on + strand, within CA265_RS03075at 761.633 kb on - strand, within CA265_RS03075at 761.785 kb on + strand, within CA265_RS03075at 761.805 kb on - strand, within CA265_RS03075at 761.839 kb on + strand, within CA265_RS03075at 761.851 kb on + strand, within CA265_RS03075at 761.866 kb on + strand, within CA265_RS03075at 761.866 kb on + strand, within CA265_RS03075at 761.979 kb on + strandat 761.979 kb on + strandat 762.023 kb on - strandat 762.048 kb on + strandat 762.057 kb on - strandat 762.067 kb on + strandat 762.067 kb on + strandat 762.068 kb on - strandat 762.068 kb on - strandat 762.068 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Spectinomycin 0.05 mg/ml
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759,576 + -0.2
759,577 - +0.6
759,577 - -1.1
759,644 + -0.2
759,712 + CA265_RS03060 0.13 -0.1
759,712 + CA265_RS03060 0.13 +0.4
759,820 + CA265_RS03060 0.28 -0.4
759,821 - CA265_RS03060 0.29 +0.4
760,008 + CA265_RS03060 0.56 -1.3
760,059 - CA265_RS03060 0.64 +0.2
760,076 + CA265_RS03060 0.66 -2.2
760,077 - CA265_RS03060 0.66 -0.4
760,079 + CA265_RS03060 0.67 +0.1
760,080 - CA265_RS03060 0.67 +0.1
760,080 - CA265_RS03060 0.67 +0.0
760,080 - CA265_RS03060 0.67 +0.8
760,082 + CA265_RS03060 0.67 -0.0
760,082 + CA265_RS03060 0.67 +0.0
760,083 - CA265_RS03060 0.67 -0.1
760,107 - CA265_RS03060 0.71 -0.0
760,143 + CA265_RS03060 0.76 +0.6
760,203 + CA265_RS03060 0.85 -0.8
760,219 - CA265_RS03060 0.87 -0.2
760,220 + CA265_RS03060 0.87 -0.3
760,266 + +0.2
760,267 - -0.3
760,287 + -0.5
760,296 + -0.5
760,296 + -0.9
760,317 - -0.1
760,419 - +0.2
760,453 - -0.6
760,473 - -0.1
760,473 - -0.6
760,477 + +1.1
760,478 - +0.1
760,525 + -0.1
760,641 + CA265_RS03065 0.18 +0.4
760,765 + CA265_RS03065 0.41 -0.4
760,777 - CA265_RS03065 0.44 +0.9
760,783 + CA265_RS03065 0.45 -1.0
760,839 + CA265_RS03065 0.55 -0.4
760,840 - CA265_RS03065 0.55 -0.9
760,878 + CA265_RS03065 0.62 -1.3
760,993 - CA265_RS03065 0.84 -1.8
761,001 + CA265_RS03065 0.85 +0.7
761,020 + CA265_RS03065 0.89 +0.6
761,021 - CA265_RS03065 0.89 +0.4
761,099 + +0.1
761,236 + CA265_RS03070 0.23 -0.8
761,236 + CA265_RS03070 0.23 +0.0
761,324 + CA265_RS03070 0.45 +0.6
761,357 - CA265_RS03070 0.54 +0.0
761,359 - CA265_RS03070 0.54 +0.6
761,427 - CA265_RS03070 0.71 +0.3
761,447 + CA265_RS03070 0.77 +0.5
761,458 + CA265_RS03070 0.79 -0.1
761,468 - CA265_RS03070 0.82 +0.7
761,492 - CA265_RS03070 0.88 -1.0
761,492 - CA265_RS03070 0.88 +0.3
761,509 + -0.2
761,510 - +0.9
761,547 + -0.2
761,547 + +0.3
761,548 - -0.3
761,608 + CA265_RS03075 0.14 -0.0
761,609 + CA265_RS03075 0.14 -0.6
761,610 - CA265_RS03075 0.14 +0.2
761,610 - CA265_RS03075 0.14 +0.4
761,610 - CA265_RS03075 0.14 +0.1
761,626 + CA265_RS03075 0.18 -0.5
761,626 + CA265_RS03075 0.18 +0.2
761,631 - CA265_RS03075 0.19 -0.2
761,632 + CA265_RS03075 0.19 -1.1
761,632 + CA265_RS03075 0.19 +0.2
761,632 + CA265_RS03075 0.19 +0.0
761,633 - CA265_RS03075 0.20 -0.1
761,785 + CA265_RS03075 0.55 -0.6
761,805 - CA265_RS03075 0.60 +0.0
761,839 + CA265_RS03075 0.68 -0.4
761,851 + CA265_RS03075 0.71 +0.9
761,866 + CA265_RS03075 0.74 -0.5
761,866 + CA265_RS03075 0.74 -0.3
761,979 + -0.6
761,979 + -2.3
762,023 - -0.6
762,048 + +1.8
762,057 - -0.0
762,067 + -1.4
762,067 + -1.4
762,068 - -0.0
762,068 - +1.4
762,068 - -0.5

Or see this region's nucleotide sequence