Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13315

Experiment: CDM1 without Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13305 and BBR_RS13310 are separated by 46 nucleotidesBBR_RS13310 and BBR_RS13315 overlap by 4 nucleotidesBBR_RS13315 and BBR_RS13320 are separated by 5 nucleotidesBBR_RS13320 and BBR_RS13325 overlap by 9 nucleotidesBBR_RS13325 and BBR_RS13330 are separated by 77 nucleotides BBR_RS13305: BBR_RS13305 - transcriptional repressor, at 760,281 to 760,709 _RS13305 BBR_RS13310: BBR_RS13310 - hypothetical protein, at 760,756 to 761,466 _RS13310 BBR_RS13315: BBR_RS13315 - hypothetical protein, at 761,463 to 761,882 _RS13315 BBR_RS13320: BBR_RS13320 - ABC transporter ATP-binding protein, at 761,888 to 762,343 _RS13320 BBR_RS13325: BBR_RS13325 - hypothetical protein, at 762,335 to 762,637 _RS13325 BBR_RS13330: BBR_RS13330 - hypothetical protein, at 762,715 to 763,062 _RS13330 Position (kb) 761 762Strain fitness (log2 ratio) -2 -1 0 1 2 3at 760.518 kb on + strand, within BBR_RS13305at 760.602 kb on + strand, within BBR_RS13305at 760.607 kb on + strand, within BBR_RS13305at 760.630 kb on + strand, within BBR_RS13305at 760.630 kb on + strand, within BBR_RS13305at 760.632 kb on + strand, within BBR_RS13305at 760.638 kb on - strand, within BBR_RS13305at 760.638 kb on - strand, within BBR_RS13305at 760.638 kb on - strand, within BBR_RS13305at 760.638 kb on - strand, within BBR_RS13305at 760.685 kb on - strandat 760.689 kb on + strandat 760.712 kb on - strandat 760.755 kb on + strandat 760.758 kb on + strandat 760.758 kb on + strandat 760.793 kb on + strandat 760.793 kb on + strandat 760.793 kb on + strandat 760.793 kb on + strandat 760.818 kb on + strandat 760.836 kb on + strand, within BBR_RS13310at 760.907 kb on + strand, within BBR_RS13310at 760.937 kb on + strand, within BBR_RS13310at 760.945 kb on - strand, within BBR_RS13310at 761.001 kb on - strand, within BBR_RS13310at 761.006 kb on - strand, within BBR_RS13310at 761.031 kb on + strand, within BBR_RS13310at 761.046 kb on + strand, within BBR_RS13310at 761.054 kb on - strand, within BBR_RS13310at 761.082 kb on + strand, within BBR_RS13310at 761.082 kb on + strand, within BBR_RS13310at 761.082 kb on + strand, within BBR_RS13310at 761.082 kb on + strand, within BBR_RS13310at 761.090 kb on - strand, within BBR_RS13310at 761.090 kb on - strand, within BBR_RS13310at 761.109 kb on - strand, within BBR_RS13310at 761.188 kb on + strand, within BBR_RS13310at 761.196 kb on + strand, within BBR_RS13310at 761.198 kb on - strand, within BBR_RS13310at 761.198 kb on - strand, within BBR_RS13310at 761.206 kb on + strand, within BBR_RS13310at 761.207 kb on - strand, within BBR_RS13310at 761.291 kb on + strand, within BBR_RS13310at 761.336 kb on - strand, within BBR_RS13310at 761.338 kb on - strand, within BBR_RS13310at 761.363 kb on + strand, within BBR_RS13310at 761.377 kb on + strand, within BBR_RS13310at 761.421 kb on + strandat 761.453 kb on + strandat 761.458 kb on + strandat 761.459 kb on + strandat 761.461 kb on - strandat 761.468 kb on + strandat 761.509 kb on + strand, within BBR_RS13315at 761.522 kb on - strand, within BBR_RS13315at 761.527 kb on - strand, within BBR_RS13315at 761.527 kb on - strand, within BBR_RS13315at 761.532 kb on + strand, within BBR_RS13315at 761.551 kb on + strand, within BBR_RS13315at 761.569 kb on - strand, within BBR_RS13315at 761.569 kb on - strand, within BBR_RS13315at 761.668 kb on + strand, within BBR_RS13315at 761.670 kb on - strand, within BBR_RS13315at 761.674 kb on + strand, within BBR_RS13315at 761.702 kb on - strand, within BBR_RS13315at 761.702 kb on - strand, within BBR_RS13315at 761.745 kb on + strand, within BBR_RS13315at 761.768 kb on + strand, within BBR_RS13315at 761.791 kb on - strand, within BBR_RS13315at 761.791 kb on - strand, within BBR_RS13315at 761.791 kb on - strand, within BBR_RS13315at 761.793 kb on - strand, within BBR_RS13315at 761.793 kb on - strand, within BBR_RS13315at 761.822 kb on - strand, within BBR_RS13315at 761.839 kb on + strand, within BBR_RS13315at 761.845 kb on + strandat 761.847 kb on - strandat 761.847 kb on - strandat 761.859 kb on + strandat 761.892 kb on - strandat 761.901 kb on + strandat 762.018 kb on + strand, within BBR_RS13320at 762.036 kb on + strand, within BBR_RS13320at 762.095 kb on - strand, within BBR_RS13320at 762.168 kb on + strand, within BBR_RS13320at 762.176 kb on - strand, within BBR_RS13320at 762.180 kb on + strand, within BBR_RS13320at 762.200 kb on + strand, within BBR_RS13320at 762.202 kb on + strand, within BBR_RS13320at 762.210 kb on - strand, within BBR_RS13320at 762.210 kb on - strand, within BBR_RS13320at 762.215 kb on - strand, within BBR_RS13320at 762.273 kb on + strand, within BBR_RS13320at 762.326 kb on + strandat 762.337 kb on + strandat 762.371 kb on + strand, within BBR_RS13325at 762.371 kb on + strand, within BBR_RS13325at 762.379 kb on - strand, within BBR_RS13325at 762.398 kb on - strand, within BBR_RS13325at 762.411 kb on - strand, within BBR_RS13325at 762.412 kb on + strand, within BBR_RS13325at 762.412 kb on + strand, within BBR_RS13325at 762.420 kb on - strand, within BBR_RS13325at 762.470 kb on - strand, within BBR_RS13325at 762.475 kb on - strand, within BBR_RS13325at 762.514 kb on + strand, within BBR_RS13325at 762.671 kb on + strandat 762.672 kb on + strandat 762.680 kb on + strandat 762.726 kb on + strandat 762.731 kb on + strandat 762.739 kb on - strandat 762.760 kb on - strand, within BBR_RS13330at 762.811 kb on + strand, within BBR_RS13330at 762.821 kb on + strand, within BBR_RS13330at 762.846 kb on + strand, within BBR_RS13330at 762.851 kb on + strand, within BBR_RS13330at 762.865 kb on - strand, within BBR_RS13330at 762.872 kb on + strand, within BBR_RS13330at 762.880 kb on - strand, within BBR_RS13330

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Serine
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760,518 + BBR_RS13305 0.55 -0.4
760,602 + BBR_RS13305 0.75 -0.5
760,607 + BBR_RS13305 0.76 +0.1
760,630 + BBR_RS13305 0.81 +0.2
760,630 + BBR_RS13305 0.81 +0.2
760,632 + BBR_RS13305 0.82 +2.7
760,638 - BBR_RS13305 0.83 +1.4
760,638 - BBR_RS13305 0.83 -1.5
760,638 - BBR_RS13305 0.83 -1.7
760,638 - BBR_RS13305 0.83 -1.4
760,685 - +2.5
760,689 + -0.1
760,712 - +1.0
760,755 + +0.9
760,758 + +1.6
760,758 + +0.1
760,793 + +1.0
760,793 + +1.2
760,793 + +0.4
760,793 + -1.0
760,818 + -0.0
760,836 + BBR_RS13310 0.11 -1.4
760,907 + BBR_RS13310 0.21 +1.0
760,937 + BBR_RS13310 0.25 +0.6
760,945 - BBR_RS13310 0.27 +1.0
761,001 - BBR_RS13310 0.34 +0.3
761,006 - BBR_RS13310 0.35 +0.6
761,031 + BBR_RS13310 0.39 +0.1
761,046 + BBR_RS13310 0.41 +1.1
761,054 - BBR_RS13310 0.42 +0.4
761,082 + BBR_RS13310 0.46 -0.5
761,082 + BBR_RS13310 0.46 -1.0
761,082 + BBR_RS13310 0.46 -1.3
761,082 + BBR_RS13310 0.46 +0.4
761,090 - BBR_RS13310 0.47 +1.0
761,090 - BBR_RS13310 0.47 +1.0
761,109 - BBR_RS13310 0.50 +0.4
761,188 + BBR_RS13310 0.61 +0.1
761,196 + BBR_RS13310 0.62 +1.9
761,198 - BBR_RS13310 0.62 +0.5
761,198 - BBR_RS13310 0.62 +0.3
761,206 + BBR_RS13310 0.63 -0.3
761,207 - BBR_RS13310 0.63 +2.1
761,291 + BBR_RS13310 0.75 -0.2
761,336 - BBR_RS13310 0.82 +1.2
761,338 - BBR_RS13310 0.82 +1.8
761,363 + BBR_RS13310 0.85 +0.9
761,377 + BBR_RS13310 0.87 +0.7
761,421 + -1.0
761,453 + -0.5
761,458 + -1.9
761,459 + -2.6
761,461 - -0.6
761,468 + +0.5
761,509 + BBR_RS13315 0.11 +1.6
761,522 - BBR_RS13315 0.14 -1.9
761,527 - BBR_RS13315 0.15 +0.2
761,527 - BBR_RS13315 0.15 +1.3
761,532 + BBR_RS13315 0.16 +0.7
761,551 + BBR_RS13315 0.21 -0.3
761,569 - BBR_RS13315 0.25 -1.4
761,569 - BBR_RS13315 0.25 -1.6
761,668 + BBR_RS13315 0.49 +2.0
761,670 - BBR_RS13315 0.49 +0.0
761,674 + BBR_RS13315 0.50 +0.5
761,702 - BBR_RS13315 0.57 +2.1
761,702 - BBR_RS13315 0.57 +1.4
761,745 + BBR_RS13315 0.67 +1.0
761,768 + BBR_RS13315 0.73 +0.3
761,791 - BBR_RS13315 0.78 -1.7
761,791 - BBR_RS13315 0.78 +0.8
761,791 - BBR_RS13315 0.78 +0.5
761,793 - BBR_RS13315 0.79 +0.1
761,793 - BBR_RS13315 0.79 +0.2
761,822 - BBR_RS13315 0.85 +0.0
761,839 + BBR_RS13315 0.90 +2.4
761,845 + -0.1
761,847 - -0.1
761,847 - +0.2
761,859 + -1.1
761,892 - -0.5
761,901 + -1.2
762,018 + BBR_RS13320 0.29 +1.7
762,036 + BBR_RS13320 0.32 +0.3
762,095 - BBR_RS13320 0.45 -1.4
762,168 + BBR_RS13320 0.61 -0.2
762,176 - BBR_RS13320 0.63 +0.8
762,180 + BBR_RS13320 0.64 +1.0
762,200 + BBR_RS13320 0.68 +0.9
762,202 + BBR_RS13320 0.69 +0.8
762,210 - BBR_RS13320 0.71 +0.0
762,210 - BBR_RS13320 0.71 +1.9
762,215 - BBR_RS13320 0.72 +2.0
762,273 + BBR_RS13320 0.84 +0.3
762,326 + -0.9
762,337 + +1.4
762,371 + BBR_RS13325 0.12 -0.3
762,371 + BBR_RS13325 0.12 +1.0
762,379 - BBR_RS13325 0.15 +1.8
762,398 - BBR_RS13325 0.21 -2.0
762,411 - BBR_RS13325 0.25 -0.6
762,412 + BBR_RS13325 0.25 -0.3
762,412 + BBR_RS13325 0.25 -0.7
762,420 - BBR_RS13325 0.28 -1.1
762,470 - BBR_RS13325 0.45 -0.8
762,475 - BBR_RS13325 0.46 -2.3
762,514 + BBR_RS13325 0.59 -0.0
762,671 + -1.7
762,672 + +1.5
762,680 + +1.0
762,726 + -1.8
762,731 + -0.9
762,739 - +1.7
762,760 - BBR_RS13330 0.13 +0.0
762,811 + BBR_RS13330 0.28 -0.0
762,821 + BBR_RS13330 0.30 +1.2
762,846 + BBR_RS13330 0.38 -1.4
762,851 + BBR_RS13330 0.39 -2.6
762,865 - BBR_RS13330 0.43 +0.3
762,872 + BBR_RS13330 0.45 +0.8
762,880 - BBR_RS13330 0.47 +3.5

Or see this region's nucleotide sequence