Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_467

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_466 and Ac3H11_467 are separated by 271 nucleotidesAc3H11_467 and Ac3H11_468 are separated by 151 nucleotides Ac3H11_466 - Transcription termination factor Rho, at 157,079 to 158,341 _466 Ac3H11_467 - Thioredoxin, at 158,613 to 158,945 _467 Ac3H11_468 - Helicase, at 159,097 to 161,652 _468 Position (kb) 158 159Strain fitness (log2 ratio) -3 -2 -1 0 1at 158.515 kb on + strandat 158.516 kb on - strandat 158.794 kb on + strand, within Ac3H11_467at 158.794 kb on + strand, within Ac3H11_467at 158.794 kb on + strand, within Ac3H11_467at 158.794 kb on + strand, within Ac3H11_467at 158.794 kb on + strand, within Ac3H11_467at 158.794 kb on + strand, within Ac3H11_467at 158.795 kb on - strand, within Ac3H11_467at 158.795 kb on - strand, within Ac3H11_467at 158.795 kb on - strand, within Ac3H11_467at 158.795 kb on - strand, within Ac3H11_467at 158.795 kb on - strand, within Ac3H11_467at 158.860 kb on + strand, within Ac3H11_467at 158.860 kb on + strand, within Ac3H11_467at 158.860 kb on + strand, within Ac3H11_467at 158.861 kb on - strand, within Ac3H11_467at 158.983 kb on + strandat 158.983 kb on + strandat 158.983 kb on + strandat 158.983 kb on + strandat 158.983 kb on + strandat 158.983 kb on + strandat 158.983 kb on + strandat 158.984 kb on - strandat 159.054 kb on + strandat 159.055 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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158,515 + -0.1
158,516 - -0.5
158,794 + Ac3H11_467 0.54 -1.6
158,794 + Ac3H11_467 0.54 -2.0
158,794 + Ac3H11_467 0.54 -2.0
158,794 + Ac3H11_467 0.54 -1.4
158,794 + Ac3H11_467 0.54 -1.0
158,794 + Ac3H11_467 0.54 -2.4
158,795 - Ac3H11_467 0.55 -2.7
158,795 - Ac3H11_467 0.55 -2.2
158,795 - Ac3H11_467 0.55 -3.3
158,795 - Ac3H11_467 0.55 -1.3
158,795 - Ac3H11_467 0.55 -2.6
158,860 + Ac3H11_467 0.74 -2.2
158,860 + Ac3H11_467 0.74 -3.1
158,860 + Ac3H11_467 0.74 -3.3
158,861 - Ac3H11_467 0.74 -2.6
158,983 + -1.6
158,983 + -1.9
158,983 + -3.3
158,983 + -2.9
158,983 + -1.5
158,983 + -3.1
158,983 + -2.8
158,984 - -0.6
159,054 + +0.2
159,055 - -0.3

Or see this region's nucleotide sequence