Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3866

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3865 and Ac3H11_3866 are separated by 168 nucleotidesAc3H11_3866 and Ac3H11_3867 are separated by 29 nucleotidesAc3H11_3867 and Ac3H11_3868 overlap by 9 nucleotides Ac3H11_3865 - hypothetical protein, at 82,609 to 83,403 _3865 Ac3H11_3866 - Regulatory protein, LuxR, at 83,572 to 84,744 _3866 Ac3H11_3867 - hypothetical protein, at 84,774 to 84,926 _3867 Ac3H11_3868 - peptidase, M48 family( EC:3.4.24.- ), at 84,918 to 86,549 _3868 Position (kb) 83 84 85Strain fitness (log2 ratio) -2 -1 0 1at 82.597 kb on + strandat 82.597 kb on + strandat 82.597 kb on + strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.642 kb on + strandat 82.642 kb on + strandat 82.642 kb on + strandat 82.852 kb on + strand, within Ac3H11_3865at 82.852 kb on + strand, within Ac3H11_3865at 82.852 kb on + strand, within Ac3H11_3865at 82.852 kb on + strand, within Ac3H11_3865at 82.852 kb on + strand, within Ac3H11_3865at 82.852 kb on + strand, within Ac3H11_3865at 82.853 kb on - strand, within Ac3H11_3865at 82.946 kb on - strand, within Ac3H11_3865at 82.946 kb on - strand, within Ac3H11_3865at 82.946 kb on - strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 83.080 kb on + strand, within Ac3H11_3865at 83.080 kb on + strand, within Ac3H11_3865at 83.081 kb on - strand, within Ac3H11_3865at 83.113 kb on + strand, within Ac3H11_3865at 83.114 kb on - strand, within Ac3H11_3865at 83.114 kb on - strand, within Ac3H11_3865at 83.218 kb on + strand, within Ac3H11_3865at 83.218 kb on + strand, within Ac3H11_3865at 83.218 kb on + strand, within Ac3H11_3865at 83.218 kb on + strand, within Ac3H11_3865at 83.219 kb on - strand, within Ac3H11_3865at 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.357 kb on - strandat 83.357 kb on - strandat 83.357 kb on - strandat 83.357 kb on - strandat 83.506 kb on + strandat 83.506 kb on + strandat 83.507 kb on - strandat 83.507 kb on - strandat 83.507 kb on - strandat 83.507 kb on - strandat 83.507 kb on - strandat 83.507 kb on - strandat 83.571 kb on + strandat 83.791 kb on + strand, within Ac3H11_3866at 83.792 kb on - strand, within Ac3H11_3866at 83.792 kb on - strand, within Ac3H11_3866at 83.895 kb on + strand, within Ac3H11_3866at 83.932 kb on + strand, within Ac3H11_3866at 83.932 kb on + strand, within Ac3H11_3866at 83.932 kb on + strand, within Ac3H11_3866at 83.933 kb on - strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.211 kb on + strand, within Ac3H11_3866at 84.211 kb on + strand, within Ac3H11_3866at 84.670 kb on + strandat 84.671 kb on - strandat 84.671 kb on - strandat 84.671 kb on - strandat 84.757 kb on + strandat 85.002 kb on + strandat 85.003 kb on - strandat 85.089 kb on + strand, within Ac3H11_3868at 85.089 kb on + strand, within Ac3H11_3868at 85.089 kb on + strand, within Ac3H11_3868at 85.089 kb on + strand, within Ac3H11_3868at 85.090 kb on - strand, within Ac3H11_3868at 85.090 kb on - strand, within Ac3H11_3868at 85.090 kb on - strand, within Ac3H11_3868at 85.195 kb on - strand, within Ac3H11_3868at 85.195 kb on - strand, within Ac3H11_3868at 85.368 kb on + strand, within Ac3H11_3868at 85.369 kb on - strand, within Ac3H11_3868

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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82,597 + +0.9
82,597 + -1.4
82,597 + -0.4
82,598 - -0.4
82,598 - -1.3
82,598 - -0.5
82,598 - -0.2
82,598 - +0.0
82,598 - -1.4
82,598 - -1.5
82,642 + +0.6
82,642 + +0.6
82,642 + -0.3
82,852 + Ac3H11_3865 0.31 +0.3
82,852 + Ac3H11_3865 0.31 +0.5
82,852 + Ac3H11_3865 0.31 -1.5
82,852 + Ac3H11_3865 0.31 +0.4
82,852 + Ac3H11_3865 0.31 -0.6
82,852 + Ac3H11_3865 0.31 -0.5
82,853 - Ac3H11_3865 0.31 +0.6
82,946 - Ac3H11_3865 0.42 -0.3
82,946 - Ac3H11_3865 0.42 -0.2
82,946 - Ac3H11_3865 0.42 -0.8
82,987 + Ac3H11_3865 0.48 +0.0
82,987 + Ac3H11_3865 0.48 -0.6
82,987 + Ac3H11_3865 0.48 -0.8
82,987 + Ac3H11_3865 0.48 -0.8
82,987 + Ac3H11_3865 0.48 +0.1
82,987 + Ac3H11_3865 0.48 -0.4
82,987 + Ac3H11_3865 0.48 +0.6
82,987 + Ac3H11_3865 0.48 -0.5
82,987 + Ac3H11_3865 0.48 -0.3
82,987 + Ac3H11_3865 0.48 -0.3
82,987 + Ac3H11_3865 0.48 +0.1
82,987 + Ac3H11_3865 0.48 +0.6
82,987 + Ac3H11_3865 0.48 -0.2
82,987 + Ac3H11_3865 0.48 -0.7
82,987 + Ac3H11_3865 0.48 -0.2
82,987 + Ac3H11_3865 0.48 +1.0
82,987 + Ac3H11_3865 0.48 +0.6
82,987 + Ac3H11_3865 0.48 -0.5
82,987 + Ac3H11_3865 0.48 -0.0
82,987 + Ac3H11_3865 0.48 -0.2
82,987 + Ac3H11_3865 0.48 +0.3
82,987 + Ac3H11_3865 0.48 -0.6
82,987 + Ac3H11_3865 0.48 -0.9
82,987 + Ac3H11_3865 0.48 -0.2
82,987 + Ac3H11_3865 0.48 +0.2
82,987 + Ac3H11_3865 0.48 +0.1
82,987 + Ac3H11_3865 0.48 -0.6
82,988 - Ac3H11_3865 0.48 -0.1
82,988 - Ac3H11_3865 0.48 -0.3
82,988 - Ac3H11_3865 0.48 -0.6
82,988 - Ac3H11_3865 0.48 -0.7
82,988 - Ac3H11_3865 0.48 +0.2
82,988 - Ac3H11_3865 0.48 +1.0
82,988 - Ac3H11_3865 0.48 -0.4
82,988 - Ac3H11_3865 0.48 +1.2
82,988 - Ac3H11_3865 0.48 +0.4
82,988 - Ac3H11_3865 0.48 +0.7
82,988 - Ac3H11_3865 0.48 +0.7
82,988 - Ac3H11_3865 0.48 -1.2
82,988 - Ac3H11_3865 0.48 +0.3
82,988 - Ac3H11_3865 0.48 -0.3
82,988 - Ac3H11_3865 0.48 +1.1
82,988 - Ac3H11_3865 0.48 -0.2
82,988 - Ac3H11_3865 0.48 -0.6
82,988 - Ac3H11_3865 0.48 +0.2
82,988 - Ac3H11_3865 0.48 +0.4
83,080 + Ac3H11_3865 0.59 -0.2
83,080 + Ac3H11_3865 0.59 -0.6
83,081 - Ac3H11_3865 0.59 -0.3
83,113 + Ac3H11_3865 0.63 -0.8
83,114 - Ac3H11_3865 0.64 +0.3
83,114 - Ac3H11_3865 0.64 -0.7
83,218 + Ac3H11_3865 0.77 -0.1
83,218 + Ac3H11_3865 0.77 -0.8
83,218 + Ac3H11_3865 0.77 -0.1
83,218 + Ac3H11_3865 0.77 +0.3
83,219 - Ac3H11_3865 0.77 -0.2
83,356 + +0.1
83,356 + -0.5
83,356 + -0.1
83,356 + -0.1
83,356 + +1.1
83,356 + +0.2
83,356 + +0.7
83,356 + -0.6
83,356 + -0.3
83,356 + +0.7
83,356 + +0.5
83,357 - -0.8
83,357 - -2.1
83,357 - -0.4
83,357 - -0.4
83,506 + +0.5
83,506 + +1.1
83,507 - -0.4
83,507 - -0.8
83,507 - +0.8
83,507 - -1.2
83,507 - -0.2
83,507 - +0.5
83,571 + +0.0
83,791 + Ac3H11_3866 0.19 -0.5
83,792 - Ac3H11_3866 0.19 +0.2
83,792 - Ac3H11_3866 0.19 -1.0
83,895 + Ac3H11_3866 0.28 -0.1
83,932 + Ac3H11_3866 0.31 -0.5
83,932 + Ac3H11_3866 0.31 +0.8
83,932 + Ac3H11_3866 0.31 +0.0
83,933 - Ac3H11_3866 0.31 -0.6
84,016 + Ac3H11_3866 0.38 +0.2
84,016 + Ac3H11_3866 0.38 -0.8
84,016 + Ac3H11_3866 0.38 +0.4
84,016 + Ac3H11_3866 0.38 -0.4
84,017 - Ac3H11_3866 0.38 -0.2
84,017 - Ac3H11_3866 0.38 -0.2
84,017 - Ac3H11_3866 0.38 -0.2
84,017 - Ac3H11_3866 0.38 +0.3
84,017 - Ac3H11_3866 0.38 -2.3
84,211 + Ac3H11_3866 0.54 +0.1
84,211 + Ac3H11_3866 0.54 +0.9
84,670 + +0.6
84,671 - -0.1
84,671 - +0.1
84,671 - +0.9
84,757 + -1.1
85,002 + +0.4
85,003 - -0.1
85,089 + Ac3H11_3868 0.10 +0.6
85,089 + Ac3H11_3868 0.10 +0.1
85,089 + Ac3H11_3868 0.10 -0.4
85,089 + Ac3H11_3868 0.10 +1.7
85,090 - Ac3H11_3868 0.11 -0.2
85,090 - Ac3H11_3868 0.11 +0.1
85,090 - Ac3H11_3868 0.11 +0.6
85,195 - Ac3H11_3868 0.17 +0.2
85,195 - Ac3H11_3868 0.17 +0.3
85,368 + Ac3H11_3868 0.28 +0.3
85,369 - Ac3H11_3868 0.28 +0.7

Or see this region's nucleotide sequence