Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3824 and Ac3H11_3825 overlap by 4 nucleotides Ac3H11_3825 and Ac3H11_3826 are separated by 23 nucleotides Ac3H11_3826 and Ac3H11_3827 are separated by 55 nucleotides Ac3H11_3827 and Ac3H11_3828 are separated by 120 nucleotides
Ac3H11_3824 - L-aspartate oxidase (EC 1.4.3.16), at 40,798 to 42,387
_3824
Ac3H11_3825 - Queuosine Biosynthesis QueE Radical SAM, at 42,384 to 43,019
_3825
Ac3H11_3826 - 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I, at 43,043 to 43,417
_3826
Ac3H11_3827 - Aspartate 1-decarboxylase (EC 4.1.1.11), at 43,473 to 43,853
_3827
Ac3H11_3828 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 43,974 to 45,311
_3828
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 41.401 kb on + strand, within Ac3H11_3824 at 41.401 kb on + strand, within Ac3H11_3824 at 41.401 kb on + strand, within Ac3H11_3824 at 41.401 kb on + strand, within Ac3H11_3824 at 41.401 kb on + strand, within Ac3H11_3824 at 41.402 kb on - strand, within Ac3H11_3824 at 41.402 kb on - strand, within Ac3H11_3824 at 41.402 kb on - strand, within Ac3H11_3824 at 41.402 kb on - strand, within Ac3H11_3824 at 41.408 kb on - strand, within Ac3H11_3824 at 41.408 kb on - strand, within Ac3H11_3824 at 41.408 kb on - strand, within Ac3H11_3824 at 41.408 kb on - strand, within Ac3H11_3824 at 42.121 kb on + strand, within Ac3H11_3824 at 42.121 kb on + strand, within Ac3H11_3824 at 42.122 kb on - strand, within Ac3H11_3824 at 42.122 kb on - strand, within Ac3H11_3824 at 42.122 kb on - strand, within Ac3H11_3824 at 42.329 kb on - strand at 42.390 kb on + strand at 42.390 kb on + strand at 42.390 kb on + strand at 42.391 kb on - strand at 42.391 kb on - strand at 42.391 kb on - strand at 43.042 kb on + strand at 43.043 kb on - strand at 43.043 kb on - strand at 43.142 kb on + strand, within Ac3H11_3826 at 43.142 kb on + strand, within Ac3H11_3826 at 43.143 kb on - strand, within Ac3H11_3826 at 43.143 kb on - strand, within Ac3H11_3826 at 43.536 kb on + strand, within Ac3H11_3827 at 43.537 kb on - strand, within Ac3H11_3827 at 43.537 kb on - strand, within Ac3H11_3827 at 43.644 kb on + strand, within Ac3H11_3827 at 43.644 kb on + strand, within Ac3H11_3827 at 43.644 kb on + strand, within Ac3H11_3827 at 43.645 kb on - strand, within Ac3H11_3827 at 43.645 kb on - strand, within Ac3H11_3827 at 43.645 kb on - strand, within Ac3H11_3827 at 43.645 kb on - strand, within Ac3H11_3827 at 43.645 kb on - strand, within Ac3H11_3827 at 43.645 kb on - strand, within Ac3H11_3827 at 43.645 kb on - strand, within Ac3H11_3827
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 41,401 + Ac3H11_3824 0.38 -3.2 41,401 + Ac3H11_3824 0.38 -2.6 41,401 + Ac3H11_3824 0.38 -2.6 41,401 + Ac3H11_3824 0.38 -1.8 41,401 + Ac3H11_3824 0.38 -1.9 41,402 - Ac3H11_3824 0.38 -1.6 41,402 - Ac3H11_3824 0.38 -0.9 41,402 - Ac3H11_3824 0.38 -3.0 41,402 - Ac3H11_3824 0.38 -1.6 41,408 - Ac3H11_3824 0.38 -1.4 41,408 - Ac3H11_3824 0.38 -2.3 41,408 - Ac3H11_3824 0.38 -1.3 41,408 - Ac3H11_3824 0.38 -0.1 42,121 + Ac3H11_3824 0.83 +0.7 42,121 + Ac3H11_3824 0.83 -0.9 42,122 - Ac3H11_3824 0.83 -1.2 42,122 - Ac3H11_3824 0.83 -0.6 42,122 - Ac3H11_3824 0.83 -0.6 42,329 - -2.5 42,390 + +0.3 42,390 + -0.2 42,390 + +0.5 42,391 - +0.4 42,391 - -2.6 42,391 - -2.5 43,042 + +0.4 43,043 - -1.1 43,043 - -0.2 43,142 + Ac3H11_3826 0.26 -0.4 43,142 + Ac3H11_3826 0.26 -0.7 43,143 - Ac3H11_3826 0.27 -1.4 43,143 - Ac3H11_3826 0.27 -0.2 43,536 + Ac3H11_3827 0.17 -1.6 43,537 - Ac3H11_3827 0.17 -3.6 43,537 - Ac3H11_3827 0.17 -2.5 43,644 + Ac3H11_3827 0.45 -0.7 43,644 + Ac3H11_3827 0.45 -2.2 43,644 + Ac3H11_3827 0.45 -0.8 43,645 - Ac3H11_3827 0.45 -3.0 43,645 - Ac3H11_3827 0.45 -1.5 43,645 - Ac3H11_3827 0.45 -0.7 43,645 - Ac3H11_3827 0.45 -2.4 43,645 - Ac3H11_3827 0.45 -2.1 43,645 - Ac3H11_3827 0.45 -2.0 43,645 - Ac3H11_3827 0.45 -1.4
Or see this region's nucleotide sequence