Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20380 and ABZR86_RS20385 are separated by 169 nucleotides ABZR86_RS20385 and ABZR86_RS20390 are separated by 14 nucleotides ABZR86_RS20390 and ABZR86_RS20395 are separated by 406 nucleotides
ABZR86_RS20380: ABZR86_RS20380 - TetR/AcrR family transcriptional regulator, at 13,559 to 14,140
_RS20380
ABZR86_RS20385: ABZR86_RS20385 - STAS domain-containing protein, at 14,310 to 14,702
_RS20385
ABZR86_RS20390: ABZR86_RS20390 - SpoIIE family protein phosphatase, at 14,717 to 17,023
_RS20390
ABZR86_RS20395: ABZR86_RS20395 - MFS transporter, at 17,430 to 18,689
_RS20395
Position (kb) 14
15
16
17
18 Strain fitness (log2 ratio) -1
0
1 at 13.878 kb on + strand, within ABZR86_RS20380 at 13.878 kb on + strand, within ABZR86_RS20380 at 14.301 kb on + strand at 14.301 kb on + strand at 14.302 kb on - strand at 14.311 kb on + strand at 14.312 kb on - strand at 14.350 kb on - strand, within ABZR86_RS20385 at 14.363 kb on - strand, within ABZR86_RS20385 at 14.466 kb on - strand, within ABZR86_RS20385 at 14.466 kb on - strand, within ABZR86_RS20385 at 14.533 kb on + strand, within ABZR86_RS20385 at 14.684 kb on + strand at 14.772 kb on + strand at 14.772 kb on + strand at 14.773 kb on - strand at 15.271 kb on - strand, within ABZR86_RS20390 at 15.351 kb on + strand, within ABZR86_RS20390 at 15.352 kb on - strand, within ABZR86_RS20390 at 15.399 kb on + strand, within ABZR86_RS20390 at 15.400 kb on - strand, within ABZR86_RS20390 at 15.744 kb on + strand, within ABZR86_RS20390 at 15.745 kb on - strand, within ABZR86_RS20390 at 15.751 kb on - strand, within ABZR86_RS20390 at 15.751 kb on - strand, within ABZR86_RS20390 at 16.171 kb on - strand, within ABZR86_RS20390 at 16.171 kb on - strand, within ABZR86_RS20390 at 16.233 kb on + strand, within ABZR86_RS20390 at 16.233 kb on + strand, within ABZR86_RS20390 at 16.276 kb on + strand, within ABZR86_RS20390 at 16.371 kb on + strand, within ABZR86_RS20390 at 16.371 kb on + strand, within ABZR86_RS20390 at 16.372 kb on - strand, within ABZR86_RS20390 at 16.372 kb on - strand, within ABZR86_RS20390 at 16.719 kb on + strand, within ABZR86_RS20390 at 16.719 kb on + strand, within ABZR86_RS20390 at 16.719 kb on + strand, within ABZR86_RS20390 at 16.720 kb on - strand, within ABZR86_RS20390 at 16.720 kb on - strand, within ABZR86_RS20390 at 16.720 kb on - strand, within ABZR86_RS20390 at 17.008 kb on + strand at 17.202 kb on - strand at 17.303 kb on + strand at 17.303 kb on + strand at 17.303 kb on + strand at 17.303 kb on + strand at 17.303 kb on + strand at 17.303 kb on + strand at 17.303 kb on + strand at 17.304 kb on - strand at 17.304 kb on - strand at 17.304 kb on - strand at 17.343 kb on + strand at 17.344 kb on - strand at 17.351 kb on + strand at 17.488 kb on - strand at 17.572 kb on - strand, within ABZR86_RS20395 at 17.610 kb on - strand, within ABZR86_RS20395 at 17.778 kb on + strand, within ABZR86_RS20395 at 17.779 kb on - strand, within ABZR86_RS20395 at 17.796 kb on + strand, within ABZR86_RS20395 at 17.796 kb on + strand, within ABZR86_RS20395
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 13,878 + ABZR86_RS20380 0.55 -0.1 13,878 + ABZR86_RS20380 0.55 +0.0 14,301 + +1.2 14,301 + -0.5 14,302 - -1.4 14,311 + +0.6 14,312 - -0.3 14,350 - ABZR86_RS20385 0.10 +0.1 14,363 - ABZR86_RS20385 0.13 -0.5 14,466 - ABZR86_RS20385 0.40 -0.2 14,466 - ABZR86_RS20385 0.40 -0.5 14,533 + ABZR86_RS20385 0.57 -0.7 14,684 + -0.5 14,772 + +1.0 14,772 + +0.4 14,773 - +0.4 15,271 - ABZR86_RS20390 0.24 -0.5 15,351 + ABZR86_RS20390 0.27 +0.7 15,352 - ABZR86_RS20390 0.28 +0.1 15,399 + ABZR86_RS20390 0.30 +0.3 15,400 - ABZR86_RS20390 0.30 +0.4 15,744 + ABZR86_RS20390 0.45 +0.3 15,745 - ABZR86_RS20390 0.45 +0.1 15,751 - ABZR86_RS20390 0.45 +0.6 15,751 - ABZR86_RS20390 0.45 +0.2 16,171 - ABZR86_RS20390 0.63 -0.5 16,171 - ABZR86_RS20390 0.63 -0.0 16,233 + ABZR86_RS20390 0.66 -0.4 16,233 + ABZR86_RS20390 0.66 +0.6 16,276 + ABZR86_RS20390 0.68 -1.0 16,371 + ABZR86_RS20390 0.72 +0.9 16,371 + ABZR86_RS20390 0.72 +0.5 16,372 - ABZR86_RS20390 0.72 +0.6 16,372 - ABZR86_RS20390 0.72 +0.8 16,719 + ABZR86_RS20390 0.87 +1.2 16,719 + ABZR86_RS20390 0.87 +1.5 16,719 + ABZR86_RS20390 0.87 +0.8 16,720 - ABZR86_RS20390 0.87 +0.4 16,720 - ABZR86_RS20390 0.87 -0.5 16,720 - ABZR86_RS20390 0.87 +0.2 17,008 + -0.8 17,202 - -0.2 17,303 + -0.1 17,303 + +0.0 17,303 + -0.8 17,303 + +1.0 17,303 + +1.0 17,303 + +0.1 17,303 + +0.9 17,304 - +0.2 17,304 - +0.1 17,304 - -0.1 17,343 + -0.7 17,344 - +0.5 17,351 + +1.0 17,488 - -0.2 17,572 - ABZR86_RS20395 0.11 +0.0 17,610 - ABZR86_RS20395 0.14 -0.6 17,778 + ABZR86_RS20395 0.28 +0.3 17,779 - ABZR86_RS20395 0.28 -0.8 17,796 + ABZR86_RS20395 0.29 +0.1 17,796 + ABZR86_RS20395 0.29 +0.8
Or see this region's nucleotide sequence