Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS16165 and ABZR86_RS16170 overlap by 4 nucleotides ABZR86_RS16170 and ABZR86_RS16175 are separated by 345 nucleotides ABZR86_RS16175 and ABZR86_RS16180 are separated by 477 nucleotides
ABZR86_RS16165: ABZR86_RS16165 - diguanylate cyclase, at 3,651,447 to 3,653,255
_RS16165
ABZR86_RS16170: ABZR86_RS16170 - hypothetical protein, at 3,653,252 to 3,653,539
_RS16170
ABZR86_RS16175: ABZR86_RS16175 - hypothetical protein, at 3,653,885 to 3,654,145
_RS16175
ABZR86_RS16180: ABZR86_RS16180 - Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB, at 3,654,623 to 3,655,900
_RS16180
Position (kb)
3653
3654
3655 Strain fitness (log2 ratio)
-2
-1
0
1 at 3652.898 kb on + strand, within ABZR86_RS16165 at 3652.898 kb on + strand, within ABZR86_RS16165 at 3652.987 kb on + strand, within ABZR86_RS16165 at 3652.988 kb on - strand, within ABZR86_RS16165 at 3652.996 kb on + strand, within ABZR86_RS16165 at 3652.996 kb on + strand, within ABZR86_RS16165 at 3652.997 kb on - strand, within ABZR86_RS16165 at 3652.999 kb on + strand, within ABZR86_RS16165 at 3652.999 kb on + strand, within ABZR86_RS16165 at 3652.999 kb on + strand, within ABZR86_RS16165 at 3652.999 kb on + strand, within ABZR86_RS16165 at 3653.000 kb on - strand, within ABZR86_RS16165 at 3653.000 kb on - strand, within ABZR86_RS16165 at 3653.000 kb on - strand, within ABZR86_RS16165 at 3653.023 kb on + strand, within ABZR86_RS16165 at 3653.648 kb on + strand at 3653.794 kb on + strand at 3653.794 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.846 kb on - strand at 3653.846 kb on - strand at 3654.233 kb on + strand at 3654.233 kb on + strand at 3654.258 kb on + strand at 3654.258 kb on + strand at 3654.258 kb on + strand at 3654.258 kb on + strand at 3654.259 kb on - strand at 3654.259 kb on - strand at 3654.259 kb on - strand at 3654.259 kb on - strand at 3654.259 kb on - strand at 3654.260 kb on + strand at 3654.260 kb on + strand at 3654.260 kb on + strand at 3654.260 kb on + strand at 3654.260 kb on + strand at 3654.260 kb on + strand at 3654.261 kb on - strand at 3654.261 kb on - strand at 3654.261 kb on - strand at 3654.261 kb on - strand at 3654.320 kb on + strand at 3654.376 kb on + strand at 3654.377 kb on - strand at 3654.377 kb on - strand at 3654.401 kb on + strand at 3654.474 kb on + strand at 3654.475 kb on - strand at 3654.475 kb on - strand at 3654.475 kb on - strand at 3654.475 kb on - strand at 3654.570 kb on + strand at 3654.570 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.621 kb on - strand at 3654.621 kb on - strand at 3654.669 kb on - strand at 3654.669 kb on - strand at 3654.974 kb on + strand, within ABZR86_RS16180 at 3654.974 kb on + strand, within ABZR86_RS16180 at 3654.974 kb on + strand, within ABZR86_RS16180 at 3654.974 kb on + strand, within ABZR86_RS16180 at 3654.974 kb on + strand, within ABZR86_RS16180
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 3,652,898 + ABZR86_RS16165 0.80 +0.4 3,652,898 + ABZR86_RS16165 0.80 +0.0 3,652,987 + ABZR86_RS16165 0.85 -0.3 3,652,988 - ABZR86_RS16165 0.85 +0.1 3,652,996 + ABZR86_RS16165 0.86 -0.8 3,652,996 + ABZR86_RS16165 0.86 +0.8 3,652,997 - ABZR86_RS16165 0.86 +1.0 3,652,999 + ABZR86_RS16165 0.86 +0.6 3,652,999 + ABZR86_RS16165 0.86 -0.6 3,652,999 + ABZR86_RS16165 0.86 -0.5 3,652,999 + ABZR86_RS16165 0.86 -1.2 3,653,000 - ABZR86_RS16165 0.86 +0.8 3,653,000 - ABZR86_RS16165 0.86 -0.3 3,653,000 - ABZR86_RS16165 0.86 +0.7 3,653,023 + ABZR86_RS16165 0.87 -0.9 3,653,648 + +0.6 3,653,794 + -0.3 3,653,794 + +0.6 3,653,845 + -0.0 3,653,845 + -0.4 3,653,845 + +0.2 3,653,845 + +0.5 3,653,845 + +1.7 3,653,845 + +1.2 3,653,845 + -0.5 3,653,845 + -0.2 3,653,845 + +0.3 3,653,845 + -0.5 3,653,846 - -0.5 3,653,846 - +0.4 3,654,233 + -0.1 3,654,233 + +0.1 3,654,258 + -0.8 3,654,258 + +0.4 3,654,258 + -0.0 3,654,258 + +0.0 3,654,259 - +0.8 3,654,259 - +0.9 3,654,259 - +0.5 3,654,259 - -0.2 3,654,259 - -0.8 3,654,260 + +0.6 3,654,260 + -0.8 3,654,260 + -0.2 3,654,260 + +0.9 3,654,260 + -0.8 3,654,260 + -0.3 3,654,261 - +0.0 3,654,261 - +0.5 3,654,261 - +0.3 3,654,261 - -0.3 3,654,320 + -1.9 3,654,376 + +0.1 3,654,377 - +0.6 3,654,377 - +0.1 3,654,401 + +0.2 3,654,474 + -0.3 3,654,475 - -0.6 3,654,475 - -0.3 3,654,475 - -0.7 3,654,475 - +0.4 3,654,570 + +0.1 3,654,570 + -0.0 3,654,620 + +0.8 3,654,620 + -0.8 3,654,620 + -0.5 3,654,620 + +0.5 3,654,620 + +0.2 3,654,620 + -0.3 3,654,620 + +0.3 3,654,621 - +0.5 3,654,621 - +0.4 3,654,669 - +1.2 3,654,669 - +0.8 3,654,974 + ABZR86_RS16180 0.27 +0.5 3,654,974 + ABZR86_RS16180 0.27 +1.2 3,654,974 + ABZR86_RS16180 0.27 -0.2 3,654,974 + ABZR86_RS16180 0.27 -0.1 3,654,974 + ABZR86_RS16180 0.27 +0.4
Or see this region's nucleotide sequence