Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS06690

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS06680 and ABZR86_RS06685 overlap by 4 nucleotidesABZR86_RS06685 and ABZR86_RS06690 are separated by 71 nucleotidesABZR86_RS06690 and ABZR86_RS06695 are separated by 19 nucleotides ABZR86_RS06680: ABZR86_RS06680 - methylthioribulose 1-phosphate dehydratase, at 1,472,934 to 1,473,581 _RS06680 ABZR86_RS06685: ABZR86_RS06685 - acireductone dioxygenase, at 1,473,578 to 1,474,147 _RS06685 ABZR86_RS06690: ABZR86_RS06690 - acireductone synthase, at 1,474,219 to 1,474,905 _RS06690 ABZR86_RS06695: ABZR86_RS06695 - C13 family peptidase, at 1,474,925 to 1,475,959 _RS06695 Position (kb) 1474 1475Strain fitness (log2 ratio) -2 -1 0 1at 1473.239 kb on - strand, within ABZR86_RS06680at 1473.239 kb on - strand, within ABZR86_RS06680at 1473.459 kb on + strand, within ABZR86_RS06680at 1473.460 kb on - strand, within ABZR86_RS06680at 1473.460 kb on - strand, within ABZR86_RS06680at 1473.460 kb on - strand, within ABZR86_RS06680at 1473.483 kb on + strand, within ABZR86_RS06680at 1473.483 kb on + strand, within ABZR86_RS06680at 1473.483 kb on + strand, within ABZR86_RS06680at 1473.483 kb on + strand, within ABZR86_RS06680at 1473.483 kb on + strand, within ABZR86_RS06680at 1473.483 kb on + strand, within ABZR86_RS06680at 1473.484 kb on - strand, within ABZR86_RS06680at 1473.484 kb on - strand, within ABZR86_RS06680at 1473.484 kb on - strand, within ABZR86_RS06680at 1473.484 kb on - strand, within ABZR86_RS06680at 1473.484 kb on - strand, within ABZR86_RS06680at 1473.749 kb on + strand, within ABZR86_RS06685at 1473.814 kb on + strand, within ABZR86_RS06685at 1473.814 kb on + strand, within ABZR86_RS06685at 1473.814 kb on + strand, within ABZR86_RS06685at 1473.944 kb on + strand, within ABZR86_RS06685at 1473.945 kb on - strand, within ABZR86_RS06685at 1473.945 kb on - strand, within ABZR86_RS06685at 1474.026 kb on - strand, within ABZR86_RS06685at 1474.588 kb on + strand, within ABZR86_RS06690at 1474.588 kb on + strand, within ABZR86_RS06690at 1474.588 kb on + strand, within ABZR86_RS06690at 1474.589 kb on - strand, within ABZR86_RS06690at 1474.594 kb on + strand, within ABZR86_RS06690at 1474.594 kb on + strand, within ABZR86_RS06690at 1474.595 kb on - strand, within ABZR86_RS06690at 1474.595 kb on - strand, within ABZR86_RS06690at 1474.675 kb on + strand, within ABZR86_RS06690at 1474.876 kb on + strandat 1474.877 kb on - strandat 1474.878 kb on + strandat 1474.916 kb on + strandat 1475.016 kb on + strandat 1475.017 kb on - strandat 1475.017 kb on - strandat 1475.017 kb on - strandat 1475.017 kb on - strandat 1475.159 kb on + strand, within ABZR86_RS06695at 1475.211 kb on + strand, within ABZR86_RS06695at 1475.212 kb on - strand, within ABZR86_RS06695at 1475.231 kb on + strand, within ABZR86_RS06695at 1475.231 kb on + strand, within ABZR86_RS06695at 1475.268 kb on + strand, within ABZR86_RS06695at 1475.269 kb on - strand, within ABZR86_RS06695at 1475.269 kb on - strand, within ABZR86_RS06695at 1475.289 kb on - strand, within ABZR86_RS06695at 1475.459 kb on + strand, within ABZR86_RS06695at 1475.460 kb on - strand, within ABZR86_RS06695at 1475.604 kb on - strand, within ABZR86_RS06695at 1475.711 kb on + strand, within ABZR86_RS06695at 1475.711 kb on + strand, within ABZR86_RS06695at 1475.711 kb on + strand, within ABZR86_RS06695at 1475.711 kb on + strand, within ABZR86_RS06695at 1475.712 kb on - strand, within ABZR86_RS06695at 1475.712 kb on - strand, within ABZR86_RS06695at 1475.712 kb on - strand, within ABZR86_RS06695at 1475.712 kb on - strand, within ABZR86_RS06695at 1475.712 kb on - strand, within ABZR86_RS06695

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,473,239 - ABZR86_RS06680 0.47 -0.3
1,473,239 - ABZR86_RS06680 0.47 +0.6
1,473,459 + ABZR86_RS06680 0.81 +0.8
1,473,460 - ABZR86_RS06680 0.81 +0.6
1,473,460 - ABZR86_RS06680 0.81 -0.9
1,473,460 - ABZR86_RS06680 0.81 -0.9
1,473,483 + ABZR86_RS06680 0.85 +0.0
1,473,483 + ABZR86_RS06680 0.85 +0.2
1,473,483 + ABZR86_RS06680 0.85 -0.3
1,473,483 + ABZR86_RS06680 0.85 +0.6
1,473,483 + ABZR86_RS06680 0.85 -0.7
1,473,483 + ABZR86_RS06680 0.85 +0.1
1,473,484 - ABZR86_RS06680 0.85 +0.1
1,473,484 - ABZR86_RS06680 0.85 +0.0
1,473,484 - ABZR86_RS06680 0.85 +1.0
1,473,484 - ABZR86_RS06680 0.85 +0.8
1,473,484 - ABZR86_RS06680 0.85 +0.2
1,473,749 + ABZR86_RS06685 0.30 -0.6
1,473,814 + ABZR86_RS06685 0.41 -0.6
1,473,814 + ABZR86_RS06685 0.41 +0.5
1,473,814 + ABZR86_RS06685 0.41 +0.3
1,473,944 + ABZR86_RS06685 0.64 -0.7
1,473,945 - ABZR86_RS06685 0.64 +0.0
1,473,945 - ABZR86_RS06685 0.64 +0.1
1,474,026 - ABZR86_RS06685 0.79 -0.3
1,474,588 + ABZR86_RS06690 0.54 +0.6
1,474,588 + ABZR86_RS06690 0.54 +0.3
1,474,588 + ABZR86_RS06690 0.54 +0.2
1,474,589 - ABZR86_RS06690 0.54 -0.6
1,474,594 + ABZR86_RS06690 0.55 -1.2
1,474,594 + ABZR86_RS06690 0.55 -0.4
1,474,595 - ABZR86_RS06690 0.55 -0.9
1,474,595 - ABZR86_RS06690 0.55 -2.2
1,474,675 + ABZR86_RS06690 0.66 -0.8
1,474,876 + +0.1
1,474,877 - -0.4
1,474,878 + +1.1
1,474,916 + +0.0
1,475,016 + +0.0
1,475,017 - -0.1
1,475,017 - +0.1
1,475,017 - -0.3
1,475,017 - +0.8
1,475,159 + ABZR86_RS06695 0.23 +0.8
1,475,211 + ABZR86_RS06695 0.28 +0.1
1,475,212 - ABZR86_RS06695 0.28 +0.0
1,475,231 + ABZR86_RS06695 0.30 +0.4
1,475,231 + ABZR86_RS06695 0.30 -0.3
1,475,268 + ABZR86_RS06695 0.33 +0.2
1,475,269 - ABZR86_RS06695 0.33 +0.6
1,475,269 - ABZR86_RS06695 0.33 +0.6
1,475,289 - ABZR86_RS06695 0.35 -0.2
1,475,459 + ABZR86_RS06695 0.52 +0.6
1,475,460 - ABZR86_RS06695 0.52 -0.7
1,475,604 - ABZR86_RS06695 0.66 -0.7
1,475,711 + ABZR86_RS06695 0.76 +0.4
1,475,711 + ABZR86_RS06695 0.76 +0.1
1,475,711 + ABZR86_RS06695 0.76 +0.6
1,475,711 + ABZR86_RS06695 0.76 -0.4
1,475,712 - ABZR86_RS06695 0.76 -0.4
1,475,712 - ABZR86_RS06695 0.76 -0.3
1,475,712 - ABZR86_RS06695 0.76 -0.6
1,475,712 - ABZR86_RS06695 0.76 -0.0
1,475,712 - ABZR86_RS06695 0.76 +0.8

Or see this region's nucleotide sequence