Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05275

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS05265 and ABZR86_RS05270 are separated by 9 nucleotidesABZR86_RS05270 and ABZR86_RS05275 are separated by 104 nucleotidesABZR86_RS05275 and ABZR86_RS05280 are separated by 76 nucleotides ABZR86_RS05265: ABZR86_RS05265 - ferritin-like domain-containing protein, at 1,183,940 to 1,185,916 _RS05265 ABZR86_RS05270: ABZR86_RS05270 - alpha/beta hydrolase, at 1,185,926 to 1,186,732 _RS05270 ABZR86_RS05275: ABZR86_RS05275 - PhzF family phenazine biosynthesis protein, at 1,186,837 to 1,187,667 _RS05275 ABZR86_RS05280: ABZR86_RS05280 - hypothetical protein, at 1,187,744 to 1,188,970 _RS05280 Position (kb) 1186 1187 1188Strain fitness (log2 ratio) -1 0 1 2at 1186.057 kb on + strand, within ABZR86_RS05270at 1186.140 kb on + strand, within ABZR86_RS05270at 1186.140 kb on + strand, within ABZR86_RS05270at 1186.140 kb on + strand, within ABZR86_RS05270at 1186.141 kb on - strand, within ABZR86_RS05270at 1186.144 kb on + strand, within ABZR86_RS05270at 1186.144 kb on + strand, within ABZR86_RS05270at 1186.145 kb on - strand, within ABZR86_RS05270at 1186.145 kb on - strand, within ABZR86_RS05270at 1186.481 kb on - strand, within ABZR86_RS05270at 1186.481 kb on - strand, within ABZR86_RS05270at 1186.481 kb on - strand, within ABZR86_RS05270at 1186.616 kb on + strand, within ABZR86_RS05270at 1186.616 kb on + strand, within ABZR86_RS05270at 1186.616 kb on + strand, within ABZR86_RS05270at 1186.617 kb on - strand, within ABZR86_RS05270at 1186.709 kb on + strandat 1186.709 kb on + strandat 1186.709 kb on + strandat 1186.710 kb on - strandat 1186.838 kb on + strandat 1186.839 kb on - strandat 1186.975 kb on - strand, within ABZR86_RS05275at 1187.104 kb on + strand, within ABZR86_RS05275at 1187.104 kb on + strand, within ABZR86_RS05275at 1187.104 kb on + strand, within ABZR86_RS05275at 1187.104 kb on + strand, within ABZR86_RS05275at 1187.104 kb on + strand, within ABZR86_RS05275at 1187.105 kb on - strand, within ABZR86_RS05275at 1187.105 kb on - strand, within ABZR86_RS05275at 1187.105 kb on - strand, within ABZR86_RS05275at 1187.746 kb on - strandat 1187.849 kb on - strandat 1187.895 kb on + strand, within ABZR86_RS05280at 1187.896 kb on - strand, within ABZR86_RS05280at 1188.415 kb on - strand, within ABZR86_RS05280at 1188.415 kb on - strand, within ABZR86_RS05280at 1188.415 kb on - strand, within ABZR86_RS05280at 1188.445 kb on - strand, within ABZR86_RS05280at 1188.445 kb on - strand, within ABZR86_RS05280at 1188.475 kb on - strand, within ABZR86_RS05280

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,186,057 + ABZR86_RS05270 0.16 +0.1
1,186,140 + ABZR86_RS05270 0.27 -0.5
1,186,140 + ABZR86_RS05270 0.27 -0.1
1,186,140 + ABZR86_RS05270 0.27 -0.1
1,186,141 - ABZR86_RS05270 0.27 +0.4
1,186,144 + ABZR86_RS05270 0.27 -0.4
1,186,144 + ABZR86_RS05270 0.27 +0.2
1,186,145 - ABZR86_RS05270 0.27 -0.1
1,186,145 - ABZR86_RS05270 0.27 -0.4
1,186,481 - ABZR86_RS05270 0.69 -0.2
1,186,481 - ABZR86_RS05270 0.69 +0.0
1,186,481 - ABZR86_RS05270 0.69 -0.3
1,186,616 + ABZR86_RS05270 0.86 +0.2
1,186,616 + ABZR86_RS05270 0.86 +0.8
1,186,616 + ABZR86_RS05270 0.86 +0.8
1,186,617 - ABZR86_RS05270 0.86 -0.2
1,186,709 + -0.2
1,186,709 + +0.3
1,186,709 + -0.2
1,186,710 - +0.3
1,186,838 + +0.1
1,186,839 - +0.2
1,186,975 - ABZR86_RS05275 0.17 +0.1
1,187,104 + ABZR86_RS05275 0.32 -0.1
1,187,104 + ABZR86_RS05275 0.32 +0.1
1,187,104 + ABZR86_RS05275 0.32 +0.1
1,187,104 + ABZR86_RS05275 0.32 +0.5
1,187,104 + ABZR86_RS05275 0.32 +0.5
1,187,105 - ABZR86_RS05275 0.32 +0.9
1,187,105 - ABZR86_RS05275 0.32 +0.1
1,187,105 - ABZR86_RS05275 0.32 +0.8
1,187,746 - +1.8
1,187,849 - +0.1
1,187,895 + ABZR86_RS05280 0.12 +0.1
1,187,896 - ABZR86_RS05280 0.12 +1.1
1,188,415 - ABZR86_RS05280 0.55 -0.3
1,188,415 - ABZR86_RS05280 0.55 -0.9
1,188,415 - ABZR86_RS05280 0.55 +0.2
1,188,445 - ABZR86_RS05280 0.57 -1.2
1,188,445 - ABZR86_RS05280 0.57 +0.3
1,188,475 - ABZR86_RS05280 0.60 -0.4

Or see this region's nucleotide sequence