Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS00775

Experiment: pyruvate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS00770 and ABZR86_RS00775 are separated by 157 nucleotidesABZR86_RS00775 and ABZR86_RS00780 are separated by 294 nucleotidesABZR86_RS00780 and ABZR86_RS00785 are separated by 125 nucleotides ABZR86_RS00770: ABZR86_RS00770 - PhoH family protein, at 150,990 to 152,369 _RS00770 ABZR86_RS00775: ABZR86_RS00775 - peroxiredoxin, at 152,527 to 152,988 _RS00775 ABZR86_RS00780: ABZR86_RS00780 - glycine cleavage system protein R, at 153,283 to 153,837 _RS00780 ABZR86_RS00785: ABZR86_RS00785 - 4-hydroxy-tetrahydrodipicolinate synthase, at 153,963 to 154,856 _RS00785 Position (kb) 152 153Strain fitness (log2 ratio) -2 -1 0 1at 151.658 kb on + strand, within ABZR86_RS00770at 151.658 kb on + strand, within ABZR86_RS00770at 151.658 kb on + strand, within ABZR86_RS00770at 151.658 kb on + strand, within ABZR86_RS00770at 151.658 kb on + strand, within ABZR86_RS00770at 151.658 kb on + strand, within ABZR86_RS00770at 151.658 kb on + strand, within ABZR86_RS00770at 151.658 kb on + strand, within ABZR86_RS00770at 151.659 kb on - strand, within ABZR86_RS00770at 151.792 kb on + strand, within ABZR86_RS00770at 151.792 kb on + strand, within ABZR86_RS00770at 151.792 kb on + strand, within ABZR86_RS00770at 151.792 kb on + strand, within ABZR86_RS00770at 151.792 kb on + strand, within ABZR86_RS00770at 151.793 kb on - strand, within ABZR86_RS00770at 151.793 kb on - strand, within ABZR86_RS00770at 151.793 kb on - strand, within ABZR86_RS00770at 151.876 kb on + strand, within ABZR86_RS00770at 151.876 kb on + strand, within ABZR86_RS00770at 151.876 kb on + strand, within ABZR86_RS00770at 151.876 kb on + strand, within ABZR86_RS00770at 151.876 kb on + strand, within ABZR86_RS00770at 151.876 kb on + strand, within ABZR86_RS00770at 151.877 kb on - strand, within ABZR86_RS00770at 151.916 kb on - strand, within ABZR86_RS00770at 151.916 kb on - strand, within ABZR86_RS00770at 151.936 kb on + strand, within ABZR86_RS00770at 151.936 kb on + strand, within ABZR86_RS00770at 151.936 kb on + strand, within ABZR86_RS00770at 151.936 kb on + strand, within ABZR86_RS00770at 151.936 kb on + strand, within ABZR86_RS00770at 151.937 kb on - strand, within ABZR86_RS00770at 151.937 kb on - strand, within ABZR86_RS00770at 151.937 kb on - strand, within ABZR86_RS00770at 151.937 kb on - strand, within ABZR86_RS00770at 151.937 kb on - strand, within ABZR86_RS00770at 151.937 kb on - strand, within ABZR86_RS00770at 152.020 kb on - strand, within ABZR86_RS00770at 152.080 kb on + strand, within ABZR86_RS00770at 152.081 kb on - strand, within ABZR86_RS00770at 152.347 kb on + strandat 152.348 kb on - strandat 152.348 kb on - strandat 152.348 kb on - strandat 152.348 kb on - strandat 152.348 kb on - strandat 152.348 kb on - strandat 152.369 kb on + strandat 152.371 kb on - strandat 152.514 kb on - strandat 152.573 kb on - strandat 152.628 kb on + strand, within ABZR86_RS00775at 152.628 kb on + strand, within ABZR86_RS00775at 152.629 kb on - strand, within ABZR86_RS00775at 152.629 kb on - strand, within ABZR86_RS00775at 152.629 kb on - strand, within ABZR86_RS00775at 152.629 kb on - strand, within ABZR86_RS00775at 152.636 kb on - strand, within ABZR86_RS00775at 152.636 kb on - strand, within ABZR86_RS00775at 152.888 kb on + strand, within ABZR86_RS00775at 152.888 kb on + strand, within ABZR86_RS00775at 152.888 kb on + strand, within ABZR86_RS00775at 152.888 kb on + strand, within ABZR86_RS00775at 152.888 kb on + strand, within ABZR86_RS00775at 152.888 kb on + strand, within ABZR86_RS00775at 152.888 kb on + strand, within ABZR86_RS00775at 152.888 kb on + strand, within ABZR86_RS00775at 152.888 kb on + strand, within ABZR86_RS00775at 152.888 kb on + strand, within ABZR86_RS00775at 152.889 kb on - strand, within ABZR86_RS00775at 152.889 kb on - strand, within ABZR86_RS00775at 152.889 kb on - strand, within ABZR86_RS00775at 152.889 kb on - strand, within ABZR86_RS00775at 152.889 kb on - strand, within ABZR86_RS00775at 152.889 kb on - strand, within ABZR86_RS00775at 152.896 kb on + strand, within ABZR86_RS00775at 152.896 kb on + strand, within ABZR86_RS00775at 152.896 kb on + strand, within ABZR86_RS00775at 153.141 kb on - strandat 153.284 kb on + strandat 153.284 kb on + strandat 153.284 kb on + strandat 153.284 kb on + strandat 153.284 kb on + strandat 153.284 kb on + strandat 153.284 kb on + strandat 153.285 kb on - strandat 153.285 kb on - strandat 153.285 kb on - strandat 153.285 kb on - strandat 153.285 kb on - strandat 153.285 kb on - strandat 153.434 kb on + strand, within ABZR86_RS00780at 153.539 kb on + strand, within ABZR86_RS00780at 153.539 kb on + strand, within ABZR86_RS00780at 153.539 kb on + strand, within ABZR86_RS00780at 153.581 kb on + strand, within ABZR86_RS00780at 153.581 kb on + strand, within ABZR86_RS00780at 153.582 kb on - strand, within ABZR86_RS00780at 153.582 kb on - strand, within ABZR86_RS00780at 153.819 kb on + strandat 153.900 kb on + strandat 153.900 kb on + strandat 153.900 kb on + strandat 153.900 kb on + strandat 153.900 kb on + strandat 153.900 kb on + strandat 153.900 kb on + strandat 153.901 kb on - strandat 153.927 kb on + strandat 153.928 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
remove
151,658 + ABZR86_RS00770 0.48 -0.9
151,658 + ABZR86_RS00770 0.48 -0.5
151,658 + ABZR86_RS00770 0.48 -0.3
151,658 + ABZR86_RS00770 0.48 -1.0
151,658 + ABZR86_RS00770 0.48 -0.8
151,658 + ABZR86_RS00770 0.48 -1.7
151,658 + ABZR86_RS00770 0.48 -0.8
151,658 + ABZR86_RS00770 0.48 -1.8
151,659 - ABZR86_RS00770 0.48 -1.7
151,792 + ABZR86_RS00770 0.58 -0.5
151,792 + ABZR86_RS00770 0.58 -0.3
151,792 + ABZR86_RS00770 0.58 +0.7
151,792 + ABZR86_RS00770 0.58 -0.4
151,792 + ABZR86_RS00770 0.58 -1.3
151,793 - ABZR86_RS00770 0.58 -0.6
151,793 - ABZR86_RS00770 0.58 -1.4
151,793 - ABZR86_RS00770 0.58 -1.8
151,876 + ABZR86_RS00770 0.64 -0.4
151,876 + ABZR86_RS00770 0.64 -0.5
151,876 + ABZR86_RS00770 0.64 -1.6
151,876 + ABZR86_RS00770 0.64 -0.4
151,876 + ABZR86_RS00770 0.64 -0.0
151,876 + ABZR86_RS00770 0.64 -0.5
151,877 - ABZR86_RS00770 0.64 -0.9
151,916 - ABZR86_RS00770 0.67 -0.2
151,916 - ABZR86_RS00770 0.67 -0.3
151,936 + ABZR86_RS00770 0.69 -0.9
151,936 + ABZR86_RS00770 0.69 -1.1
151,936 + ABZR86_RS00770 0.69 +0.7
151,936 + ABZR86_RS00770 0.69 -0.9
151,936 + ABZR86_RS00770 0.69 +0.5
151,937 - ABZR86_RS00770 0.69 -1.4
151,937 - ABZR86_RS00770 0.69 -0.9
151,937 - ABZR86_RS00770 0.69 -0.3
151,937 - ABZR86_RS00770 0.69 -1.1
151,937 - ABZR86_RS00770 0.69 -0.9
151,937 - ABZR86_RS00770 0.69 -0.7
152,020 - ABZR86_RS00770 0.75 -1.2
152,080 + ABZR86_RS00770 0.79 -0.0
152,081 - ABZR86_RS00770 0.79 -0.1
152,347 + -0.6
152,348 - -0.7
152,348 - +0.1
152,348 - +0.2
152,348 - +0.2
152,348 - +0.5
152,348 - +0.0
152,369 + -0.5
152,371 - -0.9
152,514 - +1.0
152,573 - +0.2
152,628 + ABZR86_RS00775 0.22 -0.6
152,628 + ABZR86_RS00775 0.22 -0.7
152,629 - ABZR86_RS00775 0.22 +0.8
152,629 - ABZR86_RS00775 0.22 +0.7
152,629 - ABZR86_RS00775 0.22 -0.1
152,629 - ABZR86_RS00775 0.22 -0.2
152,636 - ABZR86_RS00775 0.24 +0.3
152,636 - ABZR86_RS00775 0.24 +0.1
152,888 + ABZR86_RS00775 0.78 -1.0
152,888 + ABZR86_RS00775 0.78 -0.6
152,888 + ABZR86_RS00775 0.78 +0.6
152,888 + ABZR86_RS00775 0.78 -1.2
152,888 + ABZR86_RS00775 0.78 -0.6
152,888 + ABZR86_RS00775 0.78 +0.4
152,888 + ABZR86_RS00775 0.78 +0.0
152,888 + ABZR86_RS00775 0.78 -1.5
152,888 + ABZR86_RS00775 0.78 +0.2
152,888 + ABZR86_RS00775 0.78 -0.2
152,889 - ABZR86_RS00775 0.78 -0.3
152,889 - ABZR86_RS00775 0.78 +0.4
152,889 - ABZR86_RS00775 0.78 +0.7
152,889 - ABZR86_RS00775 0.78 -0.1
152,889 - ABZR86_RS00775 0.78 +1.1
152,889 - ABZR86_RS00775 0.78 -1.0
152,896 + ABZR86_RS00775 0.80 -1.2
152,896 + ABZR86_RS00775 0.80 -0.5
152,896 + ABZR86_RS00775 0.80 -0.0
153,141 - +0.4
153,284 + -0.2
153,284 + -0.9
153,284 + -0.1
153,284 + +0.1
153,284 + -0.2
153,284 + -0.4
153,284 + +0.2
153,285 - +0.3
153,285 - -0.7
153,285 - +0.8
153,285 - -0.3
153,285 - +1.3
153,285 - -1.3
153,434 + ABZR86_RS00780 0.27 +1.4
153,539 + ABZR86_RS00780 0.46 +0.2
153,539 + ABZR86_RS00780 0.46 +0.2
153,539 + ABZR86_RS00780 0.46 -0.5
153,581 + ABZR86_RS00780 0.54 +0.2
153,581 + ABZR86_RS00780 0.54 -0.5
153,582 - ABZR86_RS00780 0.54 +0.4
153,582 - ABZR86_RS00780 0.54 +0.1
153,819 + +0.2
153,900 + +0.1
153,900 + -1.1
153,900 + +0.4
153,900 + +0.1
153,900 + -0.1
153,900 + +0.3
153,900 + -0.0
153,901 - -0.1
153,927 + -0.2
153,928 - +0.5

Or see this region's nucleotide sequence