Experiment: Adenosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000329 and ABIE53_000330 are separated by 105 nucleotides ABIE53_000330 and ABIE53_000331 are separated by 243 nucleotides ABIE53_000331 and ABIE53_000332 are separated by 171 nucleotides
ABIE53_000329: ABIE53_000329 - hypothetical protein, at 347,467 to 347,799
_000329
ABIE53_000330: ABIE53_000330 - hypothetical protein, at 347,905 to 348,066
_000330
ABIE53_000331: ABIE53_000331 - integrase, at 348,310 to 349,521
_000331
ABIE53_000332: ABIE53_000332 - tRNA modification GTPase, at 349,693 to 351,087
_000332
Position (kb) 348
349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 347.354 kb on + strand at 347.355 kb on - strand at 347.355 kb on - strand at 347.358 kb on + strand at 347.358 kb on + strand at 347.358 kb on + strand at 347.358 kb on + strand at 347.359 kb on - strand at 347.359 kb on - strand at 347.376 kb on + strand at 347.376 kb on + strand at 347.376 kb on + strand at 347.376 kb on + strand at 347.377 kb on - strand at 347.377 kb on - strand at 347.377 kb on - strand at 347.377 kb on - strand at 347.377 kb on - strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.396 kb on - strand at 347.411 kb on + strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.477 kb on + strand at 347.478 kb on - strand at 347.478 kb on - strand at 347.478 kb on - strand at 347.606 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.633 kb on - strand, within ABIE53_000329 at 347.633 kb on - strand, within ABIE53_000329 at 347.633 kb on - strand, within ABIE53_000329 at 347.647 kb on + strand, within ABIE53_000329 at 347.648 kb on - strand, within ABIE53_000329 at 347.648 kb on - strand, within ABIE53_000329 at 347.677 kb on + strand, within ABIE53_000329 at 347.677 kb on + strand, within ABIE53_000329 at 347.677 kb on + strand, within ABIE53_000329 at 347.678 kb on - strand, within ABIE53_000329 at 347.678 kb on - strand, within ABIE53_000329 at 347.678 kb on - strand, within ABIE53_000329 at 347.678 kb on - strand, within ABIE53_000329 at 347.695 kb on + strand, within ABIE53_000329 at 347.716 kb on + strand, within ABIE53_000329 at 347.717 kb on - strand, within ABIE53_000329 at 347.717 kb on - strand, within ABIE53_000329 at 347.717 kb on - strand, within ABIE53_000329 at 347.717 kb on - strand, within ABIE53_000329 at 347.722 kb on + strand, within ABIE53_000329 at 347.722 kb on + strand, within ABIE53_000329 at 347.723 kb on - strand, within ABIE53_000329 at 347.723 kb on - strand, within ABIE53_000329 at 347.723 kb on - strand, within ABIE53_000329 at 347.723 kb on - strand, within ABIE53_000329 at 347.731 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.773 kb on + strand at 347.773 kb on + strand at 347.773 kb on + strand at 347.773 kb on + strand at 347.773 kb on + strand at 347.773 kb on + strand at 347.774 kb on - strand at 347.779 kb on + strand at 347.779 kb on + strand at 347.779 kb on + strand at 347.780 kb on - strand at 347.780 kb on - strand at 347.780 kb on - strand at 347.780 kb on - strand at 347.790 kb on + strand at 347.790 kb on + strand at 347.790 kb on + strand at 347.790 kb on + strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.797 kb on + strand at 347.797 kb on + strand at 347.797 kb on + strand at 347.797 kb on + strand at 347.797 kb on + strand at 347.797 kb on + strand at 347.798 kb on - strand at 347.798 kb on - strand at 347.798 kb on - strand at 347.805 kb on - strand at 347.805 kb on - strand at 347.889 kb on + strand at 347.889 kb on + strand at 347.890 kb on - strand at 347.899 kb on + strand at 347.899 kb on + strand at 347.900 kb on - strand at 347.934 kb on - strand, within ABIE53_000330 at 347.985 kb on - strand, within ABIE53_000330 at 348.031 kb on - strand, within ABIE53_000330 at 348.044 kb on + strand, within ABIE53_000330 at 348.044 kb on + strand, within ABIE53_000330 at 348.044 kb on + strand, within ABIE53_000330 at 348.044 kb on + strand, within ABIE53_000330 at 348.045 kb on - strand, within ABIE53_000330 at 348.045 kb on - strand, within ABIE53_000330 at 348.045 kb on - strand, within ABIE53_000330 at 348.105 kb on + strand at 348.105 kb on + strand at 348.106 kb on - strand at 348.106 kb on - strand at 348.106 kb on - strand at 348.106 kb on - strand at 348.143 kb on + strand at 348.144 kb on - strand at 348.182 kb on + strand at 348.183 kb on - strand at 348.253 kb on + strand at 348.683 kb on + strand, within ABIE53_000331 at 348.684 kb on - strand, within ABIE53_000331 at 348.684 kb on - strand, within ABIE53_000331 at 348.684 kb on - strand, within ABIE53_000331 at 348.980 kb on + strand, within ABIE53_000331 at 348.980 kb on + strand, within ABIE53_000331 at 348.980 kb on + strand, within ABIE53_000331 at 348.981 kb on - strand, within ABIE53_000331 at 348.981 kb on - strand, within ABIE53_000331 at 348.981 kb on - strand, within ABIE53_000331 at 348.986 kb on + strand, within ABIE53_000331 at 348.986 kb on + strand, within ABIE53_000331 at 348.986 kb on + strand, within ABIE53_000331 at 348.986 kb on + strand, within ABIE53_000331 at 348.986 kb on + strand, within ABIE53_000331 at 348.986 kb on + strand, within ABIE53_000331 at 348.986 kb on + strand, within ABIE53_000331 at 348.987 kb on - strand, within ABIE53_000331 at 348.987 kb on - strand, within ABIE53_000331 at 349.011 kb on + strand, within ABIE53_000331 at 349.012 kb on - strand, within ABIE53_000331 at 349.154 kb on + strand, within ABIE53_000331 at 349.155 kb on - strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.191 kb on - strand, within ABIE53_000331 at 349.191 kb on - strand, within ABIE53_000331 at 349.191 kb on - strand, within ABIE53_000331 at 349.191 kb on - strand, within ABIE53_000331 at 349.191 kb on - strand, within ABIE53_000331 at 349.191 kb on - strand, within ABIE53_000331 at 349.293 kb on - strand, within ABIE53_000331 at 349.454 kb on + strand at 349.454 kb on + strand at 349.455 kb on - strand at 349.660 kb on - strand at 349.672 kb on + strand at 349.673 kb on - strand at 349.673 kb on - strand at 350.162 kb on - strand, within ABIE53_000332 at 350.162 kb on - strand, within ABIE53_000332
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (C) remove 347,354 + -0.8 347,355 - -1.4 347,355 - -1.3 347,358 + -0.9 347,358 + -0.3 347,358 + +0.2 347,358 + -0.3 347,359 - -1.3 347,359 - -2.8 347,376 + +0.8 347,376 + +0.4 347,376 + -0.4 347,376 + +0.2 347,377 - +0.5 347,377 - +0.6 347,377 - -0.4 347,377 - +1.0 347,377 - +0.3 347,384 + +1.6 347,384 + +0.8 347,384 + +1.0 347,384 + -0.5 347,384 + -1.1 347,384 + +0.2 347,384 + -0.4 347,384 + -0.7 347,384 + -0.4 347,384 + +0.0 347,384 + +0.1 347,385 - -0.9 347,385 - -0.3 347,385 - +1.1 347,385 - -0.4 347,385 - -1.1 347,385 - -0.2 347,385 - +1.2 347,385 - -0.5 347,385 - +0.3 347,396 - +0.7 347,411 + -0.1 347,412 - +1.2 347,412 - -1.0 347,412 - -1.0 347,412 - -1.8 347,412 - -0.6 347,412 - -0.1 347,412 - -1.0 347,477 + +1.5 347,478 - +0.2 347,478 - +1.0 347,478 - +1.5 347,606 + ABIE53_000329 0.42 -0.2 347,632 + ABIE53_000329 0.50 +0.5 347,632 + ABIE53_000329 0.50 +0.9 347,632 + ABIE53_000329 0.50 +0.1 347,632 + ABIE53_000329 0.50 +0.7 347,632 + ABIE53_000329 0.50 -0.9 347,633 - ABIE53_000329 0.50 +0.9 347,633 - ABIE53_000329 0.50 +1.6 347,633 - ABIE53_000329 0.50 -0.9 347,647 + ABIE53_000329 0.54 -2.2 347,648 - ABIE53_000329 0.54 -0.9 347,648 - ABIE53_000329 0.54 -0.8 347,677 + ABIE53_000329 0.63 +0.1 347,677 + ABIE53_000329 0.63 +0.1 347,677 + ABIE53_000329 0.63 -1.6 347,678 - ABIE53_000329 0.63 -0.7 347,678 - ABIE53_000329 0.63 -0.8 347,678 - ABIE53_000329 0.63 +0.9 347,678 - ABIE53_000329 0.63 -0.5 347,695 + ABIE53_000329 0.68 -1.3 347,716 + ABIE53_000329 0.75 -0.1 347,717 - ABIE53_000329 0.75 +0.1 347,717 - ABIE53_000329 0.75 +0.6 347,717 - ABIE53_000329 0.75 -0.7 347,717 - ABIE53_000329 0.75 +0.0 347,722 + ABIE53_000329 0.77 +0.3 347,722 + ABIE53_000329 0.77 -0.2 347,723 - ABIE53_000329 0.77 -0.2 347,723 - ABIE53_000329 0.77 +0.2 347,723 - ABIE53_000329 0.77 +0.5 347,723 - ABIE53_000329 0.77 -0.7 347,731 + ABIE53_000329 0.79 -0.7 347,743 + ABIE53_000329 0.83 +0.5 347,743 + ABIE53_000329 0.83 +0.0 347,743 + ABIE53_000329 0.83 -0.0 347,743 + ABIE53_000329 0.83 +0.2 347,743 + ABIE53_000329 0.83 -1.4 347,743 + ABIE53_000329 0.83 -1.4 347,743 + ABIE53_000329 0.83 -0.6 347,744 - ABIE53_000329 0.83 -0.1 347,744 - ABIE53_000329 0.83 -0.1 347,744 - ABIE53_000329 0.83 -0.6 347,744 - ABIE53_000329 0.83 +1.5 347,744 - ABIE53_000329 0.83 -2.2 347,744 - ABIE53_000329 0.83 +1.0 347,744 - ABIE53_000329 0.83 +0.2 347,744 - ABIE53_000329 0.83 -1.4 347,744 - ABIE53_000329 0.83 -0.3 347,744 - ABIE53_000329 0.83 +2.0 347,773 + -1.4 347,773 + +0.5 347,773 + -0.5 347,773 + -0.1 347,773 + +0.6 347,773 + -0.7 347,774 - +0.2 347,779 + +0.2 347,779 + +0.0 347,779 + +2.4 347,780 - -0.6 347,780 - -1.8 347,780 - -0.2 347,780 - -1.1 347,790 + -0.0 347,790 + +0.1 347,790 + -0.3 347,790 + +0.7 347,791 - -0.5 347,791 - +2.6 347,791 - +0.5 347,791 - +0.1 347,791 - +0.2 347,791 - +1.0 347,791 - +0.2 347,797 + -1.1 347,797 + +1.5 347,797 + -0.5 347,797 + -1.9 347,797 + +0.4 347,797 + -0.3 347,798 - +0.6 347,798 - +0.2 347,798 - +1.1 347,805 - -0.5 347,805 - +0.8 347,889 + -0.1 347,889 + -0.9 347,890 - -0.1 347,899 + +0.2 347,899 + -0.4 347,900 - -1.0 347,934 - ABIE53_000330 0.18 -1.7 347,985 - ABIE53_000330 0.49 +0.6 348,031 - ABIE53_000330 0.78 -0.4 348,044 + ABIE53_000330 0.86 -1.0 348,044 + ABIE53_000330 0.86 +1.5 348,044 + ABIE53_000330 0.86 +1.7 348,044 + ABIE53_000330 0.86 +1.1 348,045 - ABIE53_000330 0.86 -1.4 348,045 - ABIE53_000330 0.86 +0.3 348,045 - ABIE53_000330 0.86 -2.0 348,105 + +0.1 348,105 + +0.5 348,106 - +0.6 348,106 - -0.0 348,106 - -0.4 348,106 - -1.0 348,143 + +2.8 348,144 - -0.4 348,182 + +0.5 348,183 - +0.7 348,253 + -0.1 348,683 + ABIE53_000331 0.31 +1.7 348,684 - ABIE53_000331 0.31 +0.6 348,684 - ABIE53_000331 0.31 -0.1 348,684 - ABIE53_000331 0.31 -0.9 348,980 + ABIE53_000331 0.55 -1.0 348,980 + ABIE53_000331 0.55 -0.7 348,980 + ABIE53_000331 0.55 -0.5 348,981 - ABIE53_000331 0.55 -0.1 348,981 - ABIE53_000331 0.55 -1.3 348,981 - ABIE53_000331 0.55 +0.2 348,986 + ABIE53_000331 0.56 -0.7 348,986 + ABIE53_000331 0.56 -0.9 348,986 + ABIE53_000331 0.56 -0.5 348,986 + ABIE53_000331 0.56 -1.7 348,986 + ABIE53_000331 0.56 +0.2 348,986 + ABIE53_000331 0.56 -0.1 348,986 + ABIE53_000331 0.56 +0.3 348,987 - ABIE53_000331 0.56 -0.8 348,987 - ABIE53_000331 0.56 -1.1 349,011 + ABIE53_000331 0.58 +1.8 349,012 - ABIE53_000331 0.58 +1.0 349,154 + ABIE53_000331 0.70 -0.5 349,155 - ABIE53_000331 0.70 +1.7 349,190 + ABIE53_000331 0.73 -1.9 349,190 + ABIE53_000331 0.73 -0.9 349,190 + ABIE53_000331 0.73 +0.9 349,190 + ABIE53_000331 0.73 +0.0 349,190 + ABIE53_000331 0.73 -1.6 349,190 + ABIE53_000331 0.73 +0.0 349,190 + ABIE53_000331 0.73 -0.9 349,190 + ABIE53_000331 0.73 -0.7 349,190 + ABIE53_000331 0.73 +3.0 349,190 + ABIE53_000331 0.73 -0.7 349,191 - ABIE53_000331 0.73 -0.3 349,191 - ABIE53_000331 0.73 -0.5 349,191 - ABIE53_000331 0.73 -0.4 349,191 - ABIE53_000331 0.73 -0.8 349,191 - ABIE53_000331 0.73 +1.0 349,191 - ABIE53_000331 0.73 -1.0 349,293 - ABIE53_000331 0.81 -1.9 349,454 + +1.0 349,454 + +0.7 349,455 - +2.0 349,660 - -0.5 349,672 + +0.3 349,673 - +0.1 349,673 - +0.5 350,162 - ABIE53_000332 0.34 +2.6 350,162 - ABIE53_000332 0.34 +1.3
Or see this region's nucleotide sequence