Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3536

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3535 and Shewana3_3536 are separated by 134 nucleotidesShewana3_3536 and Shewana3_3537 are separated by 111 nucleotides Shewana3_3535: Shewana3_3535 - hypothetical protein (RefSeq), at 4,234,507 to 4,235,316 _3535 Shewana3_3536: Shewana3_3536 - lysine exporter protein LysE/YggA (RefSeq), at 4,235,451 to 4,236,155 _3536 Shewana3_3537: Shewana3_3537 - AraC family transcriptional regulator (RefSeq), at 4,236,267 to 4,237,097 _3537 Position (kb) 4235 4236 4237Strain fitness (log2 ratio) -2 -1 0 1at 4234.490 kb on - strandat 4234.490 kb on - strandat 4234.622 kb on - strand, within Shewana3_3535at 4234.871 kb on + strand, within Shewana3_3535at 4234.910 kb on + strand, within Shewana3_3535at 4234.979 kb on - strand, within Shewana3_3535at 4234.980 kb on - strand, within Shewana3_3535at 4235.204 kb on + strand, within Shewana3_3535at 4235.411 kb on + strandat 4235.421 kb on - strandat 4235.432 kb on - strandat 4235.449 kb on + strandat 4235.457 kb on - strandat 4235.604 kb on - strand, within Shewana3_3536at 4235.681 kb on - strand, within Shewana3_3536at 4235.780 kb on + strand, within Shewana3_3536at 4235.855 kb on - strand, within Shewana3_3536at 4235.978 kb on - strand, within Shewana3_3536at 4236.102 kb on + strandat 4236.435 kb on + strand, within Shewana3_3537at 4236.444 kb on - strand, within Shewana3_3537at 4236.494 kb on + strand, within Shewana3_3537at 4236.494 kb on + strand, within Shewana3_3537at 4236.502 kb on - strand, within Shewana3_3537at 4236.597 kb on - strand, within Shewana3_3537at 4236.684 kb on + strand, within Shewana3_3537at 4236.793 kb on - strand, within Shewana3_3537at 4237.026 kb on + strandat 4237.092 kb on + strandat 4237.112 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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4,234,490 - -0.5
4,234,490 - +0.9
4,234,622 - Shewana3_3535 0.14 -0.6
4,234,871 + Shewana3_3535 0.45 +0.3
4,234,910 + Shewana3_3535 0.50 +0.4
4,234,979 - Shewana3_3535 0.58 -0.9
4,234,980 - Shewana3_3535 0.58 +0.5
4,235,204 + Shewana3_3535 0.86 -0.8
4,235,411 + +0.2
4,235,421 - +0.3
4,235,432 - -0.1
4,235,449 + -0.9
4,235,457 - +1.5
4,235,604 - Shewana3_3536 0.22 +0.3
4,235,681 - Shewana3_3536 0.33 -0.6
4,235,780 + Shewana3_3536 0.47 -0.6
4,235,855 - Shewana3_3536 0.57 -2.2
4,235,978 - Shewana3_3536 0.75 +0.2
4,236,102 + +0.7
4,236,435 + Shewana3_3537 0.20 -1.4
4,236,444 - Shewana3_3537 0.21 +0.5
4,236,494 + Shewana3_3537 0.27 +0.7
4,236,494 + Shewana3_3537 0.27 +0.5
4,236,502 - Shewana3_3537 0.28 -0.4
4,236,597 - Shewana3_3537 0.40 +0.3
4,236,684 + Shewana3_3537 0.50 -1.0
4,236,793 - Shewana3_3537 0.63 +0.3
4,237,026 + -2.2
4,237,092 + +0.1
4,237,112 - +0.3

Or see this region's nucleotide sequence