Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3378 and Shewana3_3379 are separated by 465 nucleotides Shewana3_3379 and Shewana3_3380 are separated by 180 nucleotides Shewana3_3380 and Shewana3_3381 are separated by 175 nucleotides
Shewana3_3378: Shewana3_3378 - Na(+)-translocating NADH-quinone reductase subunit A (RefSeq), at 4,048,482 to 4,049,852
_3378
Shewana3_3379: Shewana3_3379 - aldo/keto reductase (RefSeq), at 4,050,318 to 4,051,358
_3379
Shewana3_3380: Shewana3_3380 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 4,051,539 to 4,051,961
_3380
Shewana3_3381: Shewana3_3381 - hypothetical protein (RefSeq), at 4,052,137 to 4,052,664
_3381
Position (kb)
4050
4051
4052 Strain fitness (log2 ratio)
-1
0
1
2 at 4049.342 kb on + strand, within Shewana3_3378 at 4049.455 kb on + strand, within Shewana3_3378 at 4049.463 kb on - strand, within Shewana3_3378 at 4049.611 kb on + strand, within Shewana3_3378 at 4050.011 kb on - strand at 4050.163 kb on + strand at 4050.257 kb on - strand at 4050.273 kb on + strand at 4050.420 kb on + strand at 4050.425 kb on + strand, within Shewana3_3379 at 4050.428 kb on - strand, within Shewana3_3379 at 4050.470 kb on + strand, within Shewana3_3379 at 4050.470 kb on + strand, within Shewana3_3379 at 4050.478 kb on - strand, within Shewana3_3379 at 4050.478 kb on - strand, within Shewana3_3379 at 4050.539 kb on + strand, within Shewana3_3379 at 4050.698 kb on + strand, within Shewana3_3379 at 4050.715 kb on - strand, within Shewana3_3379 at 4051.017 kb on + strand, within Shewana3_3379 at 4051.146 kb on + strand, within Shewana3_3379 at 4051.191 kb on + strand, within Shewana3_3379 at 4051.199 kb on - strand, within Shewana3_3379 at 4051.248 kb on + strand, within Shewana3_3379 at 4051.248 kb on + strand, within Shewana3_3379 at 4051.248 kb on + strand, within Shewana3_3379 at 4051.279 kb on + strand at 4051.287 kb on - strand at 4051.287 kb on - strand at 4051.359 kb on - strand at 4051.417 kb on - strand at 4051.446 kb on - strand at 4051.682 kb on + strand, within Shewana3_3380 at 4051.695 kb on - strand, within Shewana3_3380 at 4051.835 kb on - strand, within Shewana3_3380 at 4051.873 kb on + strand, within Shewana3_3380 at 4051.885 kb on + strand, within Shewana3_3380 at 4051.885 kb on + strand, within Shewana3_3380 at 4051.900 kb on - strand, within Shewana3_3380
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 4,049,342 + Shewana3_3378 0.63 -1.0 4,049,455 + Shewana3_3378 0.71 -0.2 4,049,463 - Shewana3_3378 0.72 +0.1 4,049,611 + Shewana3_3378 0.82 -0.9 4,050,011 - +0.8 4,050,163 + -1.2 4,050,257 - +1.9 4,050,273 + -1.1 4,050,420 + +0.5 4,050,425 + Shewana3_3379 0.10 -0.7 4,050,428 - Shewana3_3379 0.11 +0.6 4,050,470 + Shewana3_3379 0.15 +1.2 4,050,470 + Shewana3_3379 0.15 +0.5 4,050,478 - Shewana3_3379 0.15 -0.2 4,050,478 - Shewana3_3379 0.15 -0.5 4,050,539 + Shewana3_3379 0.21 +0.6 4,050,698 + Shewana3_3379 0.37 +0.7 4,050,715 - Shewana3_3379 0.38 +0.5 4,051,017 + Shewana3_3379 0.67 -0.2 4,051,146 + Shewana3_3379 0.80 +0.5 4,051,191 + Shewana3_3379 0.84 +0.4 4,051,199 - Shewana3_3379 0.85 +0.8 4,051,248 + Shewana3_3379 0.89 +0.3 4,051,248 + Shewana3_3379 0.89 -0.2 4,051,248 + Shewana3_3379 0.89 -1.0 4,051,279 + +0.6 4,051,287 - +0.7 4,051,287 - +0.0 4,051,359 - +0.4 4,051,417 - +0.5 4,051,446 - +0.3 4,051,682 + Shewana3_3380 0.34 +0.6 4,051,695 - Shewana3_3380 0.37 -1.0 4,051,835 - Shewana3_3380 0.70 +0.3 4,051,873 + Shewana3_3380 0.79 -0.1 4,051,885 + Shewana3_3380 0.82 -0.7 4,051,885 + Shewana3_3380 0.82 -0.7 4,051,900 - Shewana3_3380 0.85 +0.1
Or see this region's nucleotide sequence