Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3351

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3350 and pgk are separated by 199 nucleotidespgk and Shewana3_3352 are separated by 132 nucleotides Shewana3_3350: Shewana3_3350 - fructose-1,6-bisphosphate aldolase (RefSeq), at 4,018,903 to 4,019,970 _3350 Shewana3_3351: pgk - phosphoglycerate kinase (RefSeq), at 4,020,170 to 4,021,345 pgk Shewana3_3352: Shewana3_3352 - erythrose 4-phosphate dehydrogenase (RefSeq), at 4,021,478 to 4,022,494 _3352 Position (kb) 4020 4021 4022Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4019.340 kb on - strand, within Shewana3_3350at 4019.345 kb on - strand, within Shewana3_3350at 4019.601 kb on + strand, within Shewana3_3350at 4019.730 kb on - strand, within Shewana3_3350at 4019.921 kb on - strandat 4021.489 kb on - strandat 4021.614 kb on - strand, within Shewana3_3352at 4021.654 kb on + strand, within Shewana3_3352at 4021.665 kb on - strand, within Shewana3_3352at 4021.667 kb on + strand, within Shewana3_3352at 4021.675 kb on - strand, within Shewana3_3352at 4021.812 kb on - strand, within Shewana3_3352at 4021.855 kb on + strand, within Shewana3_3352at 4021.888 kb on + strand, within Shewana3_3352at 4022.096 kb on - strand, within Shewana3_3352at 4022.126 kb on - strand, within Shewana3_3352at 4022.133 kb on + strand, within Shewana3_3352at 4022.140 kb on - strand, within Shewana3_3352at 4022.159 kb on + strand, within Shewana3_3352at 4022.167 kb on - strand, within Shewana3_3352at 4022.341 kb on - strand, within Shewana3_3352

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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4,019,340 - Shewana3_3350 0.41 -4.1
4,019,345 - Shewana3_3350 0.41 -3.0
4,019,601 + Shewana3_3350 0.65 -3.1
4,019,730 - Shewana3_3350 0.77 -3.1
4,019,921 - -2.8
4,021,489 - -3.7
4,021,614 - Shewana3_3352 0.13 -3.0
4,021,654 + Shewana3_3352 0.17 +1.0
4,021,665 - Shewana3_3352 0.18 -1.8
4,021,667 + Shewana3_3352 0.19 -2.8
4,021,675 - Shewana3_3352 0.19 -3.7
4,021,812 - Shewana3_3352 0.33 -2.8
4,021,855 + Shewana3_3352 0.37 -4.5
4,021,888 + Shewana3_3352 0.40 -3.8
4,022,096 - Shewana3_3352 0.61 -2.0
4,022,126 - Shewana3_3352 0.64 -5.3
4,022,133 + Shewana3_3352 0.64 -2.0
4,022,140 - Shewana3_3352 0.65 -3.7
4,022,159 + Shewana3_3352 0.67 -2.0
4,022,167 - Shewana3_3352 0.68 -3.9
4,022,341 - Shewana3_3352 0.85 -4.7

Or see this region's nucleotide sequence