Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3067 and Shewana3_3068 overlap by 8 nucleotides Shewana3_3068 and Shewana3_3069 are separated by 74 nucleotides Shewana3_3069 and Shewana3_3070 are separated by 191 nucleotides
Shewana3_3067: Shewana3_3067 - iron-sulfur cluster insertion protein ErpA (RefSeq), at 3,679,071 to 3,679,421
_3067
Shewana3_3068: Shewana3_3068 - hypothetical protein (RefSeq), at 3,679,414 to 3,680,220
_3068
Shewana3_3069: Shewana3_3069 - Cl- channel, voltage-gated family protein (RefSeq), at 3,680,295 to 3,682,019
_3069
Shewana3_3070: Shewana3_3070 - aspartate carbamoyltransferase (RefSeq), at 3,682,211 to 3,683,230
_3070
Position (kb)
3680
3681
3682
3683 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3679.532 kb on - strand, within Shewana3_3068 at 3679.551 kb on + strand, within Shewana3_3068 at 3679.620 kb on + strand, within Shewana3_3068 at 3679.626 kb on - strand, within Shewana3_3068 at 3679.732 kb on - strand, within Shewana3_3068 at 3679.747 kb on + strand, within Shewana3_3068 at 3679.755 kb on - strand, within Shewana3_3068 at 3679.883 kb on - strand, within Shewana3_3068 at 3680.102 kb on - strand, within Shewana3_3068 at 3680.106 kb on + strand, within Shewana3_3068 at 3680.232 kb on - strand at 3680.278 kb on - strand at 3680.278 kb on - strand at 3680.285 kb on + strand at 3680.285 kb on + strand at 3680.293 kb on - strand at 3680.388 kb on + strand at 3680.496 kb on - strand, within Shewana3_3069 at 3680.636 kb on - strand, within Shewana3_3069 at 3680.878 kb on - strand, within Shewana3_3069 at 3680.930 kb on - strand, within Shewana3_3069 at 3680.935 kb on + strand, within Shewana3_3069 at 3681.061 kb on + strand, within Shewana3_3069 at 3681.061 kb on + strand, within Shewana3_3069 at 3681.066 kb on + strand, within Shewana3_3069 at 3681.069 kb on - strand, within Shewana3_3069 at 3681.112 kb on - strand, within Shewana3_3069 at 3681.131 kb on - strand, within Shewana3_3069 at 3681.191 kb on - strand, within Shewana3_3069 at 3681.396 kb on + strand, within Shewana3_3069 at 3681.404 kb on - strand, within Shewana3_3069 at 3681.776 kb on - strand, within Shewana3_3069 at 3681.776 kb on - strand, within Shewana3_3069 at 3681.883 kb on - strand at 3681.969 kb on + strand at 3682.034 kb on + strand at 3682.126 kb on - strand at 3682.145 kb on + strand at 3682.242 kb on + strand at 3682.334 kb on - strand, within Shewana3_3070 at 3682.379 kb on + strand, within Shewana3_3070 at 3682.394 kb on + strand, within Shewana3_3070 at 3682.576 kb on - strand, within Shewana3_3070 at 3682.658 kb on + strand, within Shewana3_3070 at 3682.809 kb on + strand, within Shewana3_3070
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 3,679,532 - Shewana3_3068 0.15 +0.3 3,679,551 + Shewana3_3068 0.17 +0.2 3,679,620 + Shewana3_3068 0.26 -0.8 3,679,626 - Shewana3_3068 0.26 -0.1 3,679,732 - Shewana3_3068 0.39 +0.6 3,679,747 + Shewana3_3068 0.41 -0.6 3,679,755 - Shewana3_3068 0.42 -1.0 3,679,883 - Shewana3_3068 0.58 +0.7 3,680,102 - Shewana3_3068 0.85 +0.2 3,680,106 + Shewana3_3068 0.86 +0.0 3,680,232 - +0.4 3,680,278 - -0.7 3,680,278 - -0.3 3,680,285 + +1.1 3,680,285 + -0.2 3,680,293 - -0.3 3,680,388 + +0.9 3,680,496 - Shewana3_3069 0.12 +0.7 3,680,636 - Shewana3_3069 0.20 +0.8 3,680,878 - Shewana3_3069 0.34 +1.0 3,680,930 - Shewana3_3069 0.37 +0.8 3,680,935 + Shewana3_3069 0.37 -0.4 3,681,061 + Shewana3_3069 0.44 +0.5 3,681,061 + Shewana3_3069 0.44 +1.1 3,681,066 + Shewana3_3069 0.45 -0.3 3,681,069 - Shewana3_3069 0.45 +0.5 3,681,112 - Shewana3_3069 0.47 +0.9 3,681,131 - Shewana3_3069 0.48 +1.0 3,681,191 - Shewana3_3069 0.52 +1.0 3,681,396 + Shewana3_3069 0.64 +0.7 3,681,404 - Shewana3_3069 0.64 +1.0 3,681,776 - Shewana3_3069 0.86 +0.8 3,681,776 - Shewana3_3069 0.86 +0.1 3,681,883 - +0.9 3,681,969 + +0.7 3,682,034 + +0.2 3,682,126 - -0.8 3,682,145 + +0.8 3,682,242 + -3.3 3,682,334 - Shewana3_3070 0.12 -3.9 3,682,379 + Shewana3_3070 0.16 -4.2 3,682,394 + Shewana3_3070 0.18 -5.0 3,682,576 - Shewana3_3070 0.36 -4.5 3,682,658 + Shewana3_3070 0.44 -3.1 3,682,809 + Shewana3_3070 0.59 -5.4
Or see this region's nucleotide sequence