Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2980 and Shewana3_2981 are separated by 251 nucleotides Shewana3_2981 and Shewana3_2982 are separated by 130 nucleotides Shewana3_2982 and Shewana3_2983 are separated by 220 nucleotides Shewana3_2983 and Shewana3_2984 are separated by 70 nucleotides
Shewana3_2980: Shewana3_2980 - TetR family transcriptional regulator (RefSeq), at 3,580,954 to 3,581,562
_2980
Shewana3_2981: Shewana3_2981 - HPP family protein (RefSeq), at 3,581,814 to 3,582,293
_2981
Shewana3_2982: Shewana3_2982 - short chain fatty acid transporter (RefSeq), at 3,582,424 to 3,583,752
_2982
Shewana3_2983: Shewana3_2983 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 3,583,973 to 3,584,443
_2983
Shewana3_2984: Shewana3_2984 - glycosyl hydrolase family chitinase (RefSeq), at 3,584,514 to 3,587,120
_2984
Position (kb)
3582
3583
3584 Strain fitness (log2 ratio)
-1
0
1
2 at 3581.560 kb on + strand at 3581.719 kb on + strand at 3581.727 kb on - strand at 3581.732 kb on - strand at 3581.734 kb on + strand at 3581.734 kb on + strand at 3581.806 kb on - strand at 3581.901 kb on + strand, within Shewana3_2981 at 3581.919 kb on - strand, within Shewana3_2981 at 3582.018 kb on + strand, within Shewana3_2981 at 3582.119 kb on + strand, within Shewana3_2981 at 3582.119 kb on + strand, within Shewana3_2981 at 3582.129 kb on + strand, within Shewana3_2981 at 3582.137 kb on - strand, within Shewana3_2981 at 3582.137 kb on - strand, within Shewana3_2981 at 3582.214 kb on + strand, within Shewana3_2981 at 3582.287 kb on + strand at 3582.557 kb on - strand, within Shewana3_2982 at 3582.736 kb on + strand, within Shewana3_2982 at 3582.766 kb on - strand, within Shewana3_2982 at 3582.828 kb on - strand, within Shewana3_2982 at 3582.867 kb on + strand, within Shewana3_2982 at 3582.867 kb on + strand, within Shewana3_2982 at 3582.867 kb on + strand, within Shewana3_2982 at 3582.937 kb on - strand, within Shewana3_2982 at 3583.063 kb on - strand, within Shewana3_2982 at 3583.070 kb on + strand, within Shewana3_2982 at 3583.150 kb on + strand, within Shewana3_2982 at 3583.197 kb on - strand, within Shewana3_2982 at 3583.202 kb on - strand, within Shewana3_2982 at 3583.371 kb on + strand, within Shewana3_2982 at 3583.757 kb on - strand at 3583.757 kb on - strand at 3583.804 kb on + strand at 3583.825 kb on - strand at 3584.074 kb on - strand, within Shewana3_2983 at 3584.595 kb on + strand at 3584.705 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 3,581,560 + -1.4 3,581,719 + -1.4 3,581,727 - +0.2 3,581,732 - +0.6 3,581,734 + -0.0 3,581,734 + +0.3 3,581,806 - -0.3 3,581,901 + Shewana3_2981 0.18 +0.4 3,581,919 - Shewana3_2981 0.22 -0.4 3,582,018 + Shewana3_2981 0.42 +0.4 3,582,119 + Shewana3_2981 0.64 +0.4 3,582,119 + Shewana3_2981 0.64 +0.3 3,582,129 + Shewana3_2981 0.66 -0.1 3,582,137 - Shewana3_2981 0.67 -1.0 3,582,137 - Shewana3_2981 0.67 +0.4 3,582,214 + Shewana3_2981 0.83 +2.0 3,582,287 + +0.1 3,582,557 - Shewana3_2982 0.10 -0.6 3,582,736 + Shewana3_2982 0.23 -1.6 3,582,766 - Shewana3_2982 0.26 +0.5 3,582,828 - Shewana3_2982 0.30 +0.3 3,582,867 + Shewana3_2982 0.33 +1.0 3,582,867 + Shewana3_2982 0.33 -0.4 3,582,867 + Shewana3_2982 0.33 +0.5 3,582,937 - Shewana3_2982 0.39 +0.1 3,583,063 - Shewana3_2982 0.48 +1.4 3,583,070 + Shewana3_2982 0.49 -0.9 3,583,150 + Shewana3_2982 0.55 +0.7 3,583,197 - Shewana3_2982 0.58 +0.2 3,583,202 - Shewana3_2982 0.59 +0.6 3,583,371 + Shewana3_2982 0.71 +0.5 3,583,757 - +0.8 3,583,757 - -0.9 3,583,804 + -0.3 3,583,825 - +0.8 3,584,074 - Shewana3_2983 0.21 +0.4 3,584,595 + -1.5 3,584,705 - +0.1
Or see this region's nucleotide sequence