Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2982

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2980 and Shewana3_2981 are separated by 251 nucleotidesShewana3_2981 and Shewana3_2982 are separated by 130 nucleotidesShewana3_2982 and Shewana3_2983 are separated by 220 nucleotidesShewana3_2983 and Shewana3_2984 are separated by 70 nucleotides Shewana3_2980: Shewana3_2980 - TetR family transcriptional regulator (RefSeq), at 3,580,954 to 3,581,562 _2980 Shewana3_2981: Shewana3_2981 - HPP family protein (RefSeq), at 3,581,814 to 3,582,293 _2981 Shewana3_2982: Shewana3_2982 - short chain fatty acid transporter (RefSeq), at 3,582,424 to 3,583,752 _2982 Shewana3_2983: Shewana3_2983 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 3,583,973 to 3,584,443 _2983 Shewana3_2984: Shewana3_2984 - glycosyl hydrolase family chitinase (RefSeq), at 3,584,514 to 3,587,120 _2984 Position (kb) 3582 3583 3584Strain fitness (log2 ratio) -1 0 1 2at 3581.560 kb on + strandat 3581.719 kb on + strandat 3581.727 kb on - strandat 3581.732 kb on - strandat 3581.734 kb on + strandat 3581.734 kb on + strandat 3581.806 kb on - strandat 3581.901 kb on + strand, within Shewana3_2981at 3581.919 kb on - strand, within Shewana3_2981at 3582.018 kb on + strand, within Shewana3_2981at 3582.119 kb on + strand, within Shewana3_2981at 3582.119 kb on + strand, within Shewana3_2981at 3582.129 kb on + strand, within Shewana3_2981at 3582.137 kb on - strand, within Shewana3_2981at 3582.137 kb on - strand, within Shewana3_2981at 3582.214 kb on + strand, within Shewana3_2981at 3582.287 kb on + strandat 3582.557 kb on - strand, within Shewana3_2982at 3582.736 kb on + strand, within Shewana3_2982at 3582.766 kb on - strand, within Shewana3_2982at 3582.828 kb on - strand, within Shewana3_2982at 3582.867 kb on + strand, within Shewana3_2982at 3582.867 kb on + strand, within Shewana3_2982at 3582.867 kb on + strand, within Shewana3_2982at 3582.937 kb on - strand, within Shewana3_2982at 3583.063 kb on - strand, within Shewana3_2982at 3583.070 kb on + strand, within Shewana3_2982at 3583.150 kb on + strand, within Shewana3_2982at 3583.197 kb on - strand, within Shewana3_2982at 3583.202 kb on - strand, within Shewana3_2982at 3583.371 kb on + strand, within Shewana3_2982at 3583.757 kb on - strandat 3583.757 kb on - strandat 3583.804 kb on + strandat 3583.825 kb on - strandat 3584.074 kb on - strand, within Shewana3_2983at 3584.595 kb on + strandat 3584.705 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,581,560 + -1.4
3,581,719 + -1.4
3,581,727 - +0.2
3,581,732 - +0.6
3,581,734 + -0.0
3,581,734 + +0.3
3,581,806 - -0.3
3,581,901 + Shewana3_2981 0.18 +0.4
3,581,919 - Shewana3_2981 0.22 -0.4
3,582,018 + Shewana3_2981 0.42 +0.4
3,582,119 + Shewana3_2981 0.64 +0.4
3,582,119 + Shewana3_2981 0.64 +0.3
3,582,129 + Shewana3_2981 0.66 -0.1
3,582,137 - Shewana3_2981 0.67 -1.0
3,582,137 - Shewana3_2981 0.67 +0.4
3,582,214 + Shewana3_2981 0.83 +2.0
3,582,287 + +0.1
3,582,557 - Shewana3_2982 0.10 -0.6
3,582,736 + Shewana3_2982 0.23 -1.6
3,582,766 - Shewana3_2982 0.26 +0.5
3,582,828 - Shewana3_2982 0.30 +0.3
3,582,867 + Shewana3_2982 0.33 +1.0
3,582,867 + Shewana3_2982 0.33 -0.4
3,582,867 + Shewana3_2982 0.33 +0.5
3,582,937 - Shewana3_2982 0.39 +0.1
3,583,063 - Shewana3_2982 0.48 +1.4
3,583,070 + Shewana3_2982 0.49 -0.9
3,583,150 + Shewana3_2982 0.55 +0.7
3,583,197 - Shewana3_2982 0.58 +0.2
3,583,202 - Shewana3_2982 0.59 +0.6
3,583,371 + Shewana3_2982 0.71 +0.5
3,583,757 - +0.8
3,583,757 - -0.9
3,583,804 + -0.3
3,583,825 - +0.8
3,584,074 - Shewana3_2983 0.21 +0.4
3,584,595 + -1.5
3,584,705 - +0.1

Or see this region's nucleotide sequence