Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdoG and Shewana3_2515 are separated by 700 nucleotides Shewana3_2515 and bioD are separated by 80 nucleotides bioD and Shewana3_2517 are separated by 55 nucleotides
Shewana3_2514: mdoG - glucan biosynthesis protein G (RefSeq), at 3,004,504 to 3,006,084
mdoG
Shewana3_2515: Shewana3_2515 - hypothetical protein (RefSeq), at 3,006,785 to 3,007,753
_2515
Shewana3_2516: bioD - dithiobiotin synthetase (RefSeq), at 3,007,834 to 3,008,529
bioD
Shewana3_2517: Shewana3_2517 - biotin biosynthesis protein BioC (RefSeq), at 3,008,585 to 3,009,412
_2517
Position (kb)
3006
3007
3008 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3006.034 kb on - strand at 3006.097 kb on + strand at 3006.110 kb on - strand at 3006.151 kb on + strand at 3006.159 kb on - strand at 3006.159 kb on - strand at 3006.159 kb on - strand at 3006.159 kb on - strand at 3006.159 kb on - strand at 3006.159 kb on - strand at 3006.208 kb on + strand at 3006.216 kb on - strand at 3006.216 kb on - strand at 3006.267 kb on - strand at 3006.352 kb on + strand at 3006.352 kb on + strand at 3006.382 kb on - strand at 3006.405 kb on - strand at 3006.519 kb on + strand at 3006.622 kb on + strand at 3006.896 kb on - strand, within Shewana3_2515 at 3006.906 kb on + strand, within Shewana3_2515 at 3006.918 kb on + strand, within Shewana3_2515 at 3006.931 kb on + strand, within Shewana3_2515 at 3007.045 kb on + strand, within Shewana3_2515 at 3007.052 kb on - strand, within Shewana3_2515 at 3007.238 kb on - strand, within Shewana3_2515 at 3007.313 kb on + strand, within Shewana3_2515 at 3007.319 kb on + strand, within Shewana3_2515 at 3007.332 kb on - strand, within Shewana3_2515 at 3007.458 kb on + strand, within Shewana3_2515 at 3007.458 kb on + strand, within Shewana3_2515 at 3007.458 kb on + strand, within Shewana3_2515 at 3007.458 kb on + strand, within Shewana3_2515 at 3007.466 kb on - strand, within Shewana3_2515 at 3007.466 kb on - strand, within Shewana3_2515 at 3007.466 kb on - strand, within Shewana3_2515 at 3007.466 kb on - strand, within Shewana3_2515 at 3007.468 kb on + strand, within Shewana3_2515 at 3007.468 kb on + strand, within Shewana3_2515 at 3007.476 kb on - strand, within Shewana3_2515 at 3007.480 kb on + strand, within Shewana3_2515
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 3,006,034 - +2.6 3,006,097 + -0.7 3,006,110 - +0.0 3,006,151 + -0.4 3,006,159 - +0.6 3,006,159 - +0.3 3,006,159 - +0.2 3,006,159 - -0.8 3,006,159 - -2.3 3,006,159 - +1.7 3,006,208 + -0.3 3,006,216 - -0.7 3,006,216 - -1.4 3,006,267 - -0.1 3,006,352 + +0.9 3,006,352 + +0.2 3,006,382 - +0.6 3,006,405 - +1.0 3,006,519 + +0.5 3,006,622 + +0.4 3,006,896 - Shewana3_2515 0.11 -2.4 3,006,906 + Shewana3_2515 0.12 -0.8 3,006,918 + Shewana3_2515 0.14 +0.4 3,006,931 + Shewana3_2515 0.15 +0.9 3,007,045 + Shewana3_2515 0.27 +0.2 3,007,052 - Shewana3_2515 0.28 +1.2 3,007,238 - Shewana3_2515 0.47 -2.6 3,007,313 + Shewana3_2515 0.54 +0.4 3,007,319 + Shewana3_2515 0.55 +0.0 3,007,332 - Shewana3_2515 0.56 +1.0 3,007,458 + Shewana3_2515 0.69 +0.9 3,007,458 + Shewana3_2515 0.69 -0.1 3,007,458 + Shewana3_2515 0.69 -0.3 3,007,458 + Shewana3_2515 0.69 +0.1 3,007,466 - Shewana3_2515 0.70 -1.0 3,007,466 - Shewana3_2515 0.70 -1.4 3,007,466 - Shewana3_2515 0.70 +0.9 3,007,466 - Shewana3_2515 0.70 -1.3 3,007,468 + Shewana3_2515 0.70 +1.5 3,007,468 + Shewana3_2515 0.70 -0.1 3,007,476 - Shewana3_2515 0.71 +0.3 3,007,480 + Shewana3_2515 0.72 -0.3
Or see this region's nucleotide sequence