Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0018

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglyQ and Shewana3_0018 are separated by 118 nucleotidesShewana3_0018 and Shewana3_0019 are separated by 85 nucleotides Shewana3_0017: glyQ - glycyl-tRNA synthetase subunit alpha (RefSeq), at 20,889 to 21,794 glyQ Shewana3_0018: Shewana3_0018 - DNA-3-methyladenine glycosylase I (RefSeq), at 21,913 to 22,488 _0018 Shewana3_0019: Shewana3_0019 - amidohydrolase (RefSeq), at 22,574 to 25,762 _0019 Position (kb) 21 22 23Strain fitness (log2 ratio) -2 -1 0 1 2at 21.895 kb on + strandat 21.895 kb on + strandat 21.976 kb on + strand, within Shewana3_0018at 21.976 kb on + strand, within Shewana3_0018at 22.020 kb on + strand, within Shewana3_0018at 22.025 kb on + strand, within Shewana3_0018at 22.226 kb on - strand, within Shewana3_0018at 22.271 kb on + strand, within Shewana3_0018at 22.313 kb on + strand, within Shewana3_0018at 22.340 kb on + strand, within Shewana3_0018at 22.353 kb on + strand, within Shewana3_0018at 22.353 kb on + strand, within Shewana3_0018at 22.541 kb on + strandat 22.674 kb on - strandat 22.684 kb on - strandat 22.806 kb on + strandat 22.814 kb on - strandat 22.869 kb on + strandat 22.883 kb on - strandat 22.960 kb on + strand, within Shewana3_0019at 22.991 kb on + strand, within Shewana3_0019at 23.116 kb on + strand, within Shewana3_0019at 23.126 kb on - strand, within Shewana3_0019at 23.393 kb on + strand, within Shewana3_0019at 23.401 kb on - strand, within Shewana3_0019

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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21,895 + +1.9
21,895 + -0.1
21,976 + Shewana3_0018 0.11 -1.1
21,976 + Shewana3_0018 0.11 -0.0
22,020 + Shewana3_0018 0.19 +0.5
22,025 + Shewana3_0018 0.19 +0.5
22,226 - Shewana3_0018 0.54 -0.3
22,271 + Shewana3_0018 0.62 +0.3
22,313 + Shewana3_0018 0.69 -1.0
22,340 + Shewana3_0018 0.74 +0.3
22,353 + Shewana3_0018 0.76 +0.0
22,353 + Shewana3_0018 0.76 -0.9
22,541 + -0.1
22,674 - -0.9
22,684 - -0.9
22,806 + +0.6
22,814 - -2.0
22,869 + -0.0
22,883 - +0.2
22,960 + Shewana3_0019 0.12 -0.5
22,991 + Shewana3_0019 0.13 +0.3
23,116 + Shewana3_0019 0.17 +0.4
23,126 - Shewana3_0019 0.17 +0.7
23,393 + Shewana3_0019 0.26 -0.3
23,401 - Shewana3_0019 0.26 -0.0

Or see this region's nucleotide sequence