Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3673 and Shew_3674 are separated by 14 nucleotides Shew_3674 and Shew_3675 are separated by 7 nucleotides Shew_3675 and Shew_3676 are separated by 9 nucleotides
Shew_3673: Shew_3673 - hypothetical protein (RefSeq), at 4,375,009 to 4,375,548
_3673
Shew_3674: Shew_3674 - cobalt transport protein (RefSeq), at 4,375,563 to 4,376,216
_3674
Shew_3675: Shew_3675 - ABC transporter-related protein (RefSeq), at 4,376,224 to 4,377,588
_3675
Shew_3676: Shew_3676 - TonB-dependent receptor, plug (RefSeq), at 4,377,598 to 4,379,805
_3676
Position (kb) 4376
4377
4378 Strain fitness (log2 ratio) -2
-1
0
1 at 4375.449 kb on + strand, within Shew_3673 at 4375.675 kb on + strand, within Shew_3674 at 4375.683 kb on - strand, within Shew_3674 at 4376.126 kb on + strand, within Shew_3674 at 4376.126 kb on + strand, within Shew_3674 at 4376.334 kb on - strand at 4376.353 kb on - strand at 4376.489 kb on + strand, within Shew_3675 at 4376.497 kb on - strand, within Shew_3675 at 4376.878 kb on + strand, within Shew_3675 at 4376.942 kb on + strand, within Shew_3675 at 4376.996 kb on - strand, within Shew_3675 at 4377.081 kb on - strand, within Shew_3675 at 4377.219 kb on + strand, within Shew_3675 at 4377.219 kb on + strand, within Shew_3675 at 4377.227 kb on - strand, within Shew_3675 at 4377.817 kb on - strand at 4377.821 kb on - strand, within Shew_3676 at 4378.056 kb on - strand, within Shew_3676 at 4378.114 kb on + strand, within Shew_3676 at 4378.164 kb on + strand, within Shew_3676 at 4378.172 kb on - strand, within Shew_3676 at 4378.216 kb on - strand, within Shew_3676 at 4378.297 kb on + strand, within Shew_3676 at 4378.357 kb on + strand, within Shew_3676 at 4378.537 kb on + strand, within Shew_3676
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 4,375,449 + Shew_3673 0.81 +1.0 4,375,675 + Shew_3674 0.17 -0.1 4,375,683 - Shew_3674 0.18 +0.2 4,376,126 + Shew_3674 0.86 -0.0 4,376,126 + Shew_3674 0.86 -0.0 4,376,334 - -0.0 4,376,353 - +1.2 4,376,489 + Shew_3675 0.19 +0.4 4,376,497 - Shew_3675 0.20 -0.5 4,376,878 + Shew_3675 0.48 -1.9 4,376,942 + Shew_3675 0.53 -1.2 4,376,996 - Shew_3675 0.57 -0.3 4,377,081 - Shew_3675 0.63 +0.9 4,377,219 + Shew_3675 0.73 +1.5 4,377,219 + Shew_3675 0.73 +0.7 4,377,227 - Shew_3675 0.73 +0.6 4,377,817 - -0.3 4,377,821 - Shew_3676 0.10 +0.4 4,378,056 - Shew_3676 0.21 +0.0 4,378,114 + Shew_3676 0.23 +0.2 4,378,164 + Shew_3676 0.26 +0.2 4,378,172 - Shew_3676 0.26 -0.2 4,378,216 - Shew_3676 0.28 -0.5 4,378,297 + Shew_3676 0.32 +0.0 4,378,357 + Shew_3676 0.34 -0.6 4,378,537 + Shew_3676 0.43 +0.2
Or see this region's nucleotide sequence