Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2948 and Shew_2949 are separated by 114 nucleotides Shew_2949 and Shew_2950 overlap by 1 nucleotides Shew_2950 and Shew_2951 are separated by 123 nucleotides
Shew_2948: Shew_2948 - ATPase (RefSeq), at 3,492,164 to 3,494,737
_2948
Shew_2949: Shew_2949 - hypothetical protein (RefSeq), at 3,494,852 to 3,495,571
_2949
Shew_2950: Shew_2950 - RluA family pseudouridine synthase (RefSeq), at 3,495,571 to 3,496,542
_2950
Shew_2951: Shew_2951 - putative lipoprotein (RefSeq), at 3,496,666 to 3,497,424
_2951
Position (kb) 3495
3496
3497 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 3494.734 kb on + strand at 3495.189 kb on + strand, within Shew_2949 at 3495.324 kb on + strand, within Shew_2949 at 3495.358 kb on + strand, within Shew_2949 at 3495.413 kb on - strand, within Shew_2949 at 3495.725 kb on - strand, within Shew_2950 at 3496.412 kb on + strand, within Shew_2950 at 3496.479 kb on + strand at 3496.513 kb on - strand at 3497.450 kb on + strand at 3497.487 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 3,494,734 + +0.3 3,495,189 + Shew_2949 0.47 +0.0 3,495,324 + Shew_2949 0.66 +0.5 3,495,358 + Shew_2949 0.70 +0.1 3,495,413 - Shew_2949 0.78 +0.4 3,495,725 - Shew_2950 0.16 -4.0 3,496,412 + Shew_2950 0.87 -2.4 3,496,479 + -3.7 3,496,513 - -3.7 3,497,450 + +0.2 3,497,487 - -0.4
Or see this region's nucleotide sequence