Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2896 and Shew_2897 are separated by 156 nucleotides Shew_2897 and Shew_2898 are separated by 152 nucleotides Shew_2898 and Shew_2899 are separated by 3 nucleotides
Shew_2896: Shew_2896 - sodium:neurotransmitter symporter (RefSeq), at 3,433,919 to 3,435,430
_2896
Shew_2897: Shew_2897 - LysR family transcriptional regulator (RefSeq), at 3,435,587 to 3,436,471
_2897
Shew_2898: Shew_2898 - hypothetical protein (RefSeq), at 3,436,624 to 3,436,983
_2898
Shew_2899: Shew_2899 - glutathione synthetase (RefSeq), at 3,436,987 to 3,438,021
_2899
Position (kb) 3435
3436
3437 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 3434.587 kb on + strand, within Shew_2896 at 3435.014 kb on - strand, within Shew_2896 at 3435.072 kb on - strand, within Shew_2896 at 3436.206 kb on + strand, within Shew_2897 at 3436.243 kb on + strand, within Shew_2897 at 3436.243 kb on + strand, within Shew_2897 at 3436.243 kb on + strand, within Shew_2897 at 3436.251 kb on - strand, within Shew_2897 at 3436.446 kb on - strand at 3436.914 kb on - strand, within Shew_2898 at 3437.086 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 3,434,587 + Shew_2896 0.44 -0.0 3,435,014 - Shew_2896 0.72 +0.3 3,435,072 - Shew_2896 0.76 +0.3 3,436,206 + Shew_2897 0.70 +0.8 3,436,243 + Shew_2897 0.74 -2.8 3,436,243 + Shew_2897 0.74 -5.7 3,436,243 + Shew_2897 0.74 -5.4 3,436,251 - Shew_2897 0.75 -2.8 3,436,446 - -2.2 3,436,914 - Shew_2898 0.81 -0.7 3,437,086 - -0.3
Or see this region's nucleotide sequence