Strain Fitness in Shewanella loihica PV-4 around Shew_2480

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2479 and Shew_2480 are separated by 62 nucleotidesShew_2480 and Shew_2481 are separated by 847 nucleotides Shew_2479: Shew_2479 - methyltransferase type 11 (RefSeq), at 2,913,826 to 2,914,833 _2479 Shew_2480: Shew_2480 - TonB-dependent receptor (RefSeq), at 2,914,896 to 2,917,526 _2480 Shew_2481: Shew_2481 - porin (RefSeq), at 2,918,374 to 2,919,585 _2481 Position (kb) 2914 2915 2916 2917 2918Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2914.057 kb on - strand, within Shew_2479at 2914.330 kb on + strand, within Shew_2479at 2914.407 kb on - strand, within Shew_2479at 2914.538 kb on + strand, within Shew_2479at 2914.554 kb on + strand, within Shew_2479at 2914.554 kb on + strand, within Shew_2479at 2914.562 kb on - strand, within Shew_2479at 2914.563 kb on - strand, within Shew_2479at 2914.650 kb on - strand, within Shew_2479at 2914.938 kb on + strandat 2914.949 kb on + strandat 2915.227 kb on - strand, within Shew_2480at 2915.474 kb on + strand, within Shew_2480at 2915.743 kb on + strand, within Shew_2480at 2915.762 kb on - strand, within Shew_2480at 2915.772 kb on + strand, within Shew_2480at 2915.808 kb on + strand, within Shew_2480at 2915.995 kb on + strand, within Shew_2480at 2915.995 kb on + strand, within Shew_2480at 2916.140 kb on - strand, within Shew_2480at 2916.146 kb on - strand, within Shew_2480at 2916.223 kb on - strand, within Shew_2480at 2917.116 kb on - strand, within Shew_2480at 2917.116 kb on - strand, within Shew_2480at 2917.221 kb on + strand, within Shew_2480at 2917.221 kb on + strand, within Shew_2480at 2918.100 kb on + strandat 2918.108 kb on - strandat 2918.109 kb on - strandat 2918.159 kb on - strandat 2918.178 kb on - strandat 2918.255 kb on - strandat 2918.257 kb on + strandat 2918.257 kb on + strandat 2918.369 kb on + strandat 2918.444 kb on + strandat 2918.485 kb on - strandat 2918.499 kb on + strand, within Shew_2481

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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2,914,057 - Shew_2479 0.23 -0.2
2,914,330 + Shew_2479 0.50 +0.2
2,914,407 - Shew_2479 0.58 -0.0
2,914,538 + Shew_2479 0.71 -0.2
2,914,554 + Shew_2479 0.72 -0.5
2,914,554 + Shew_2479 0.72 +0.4
2,914,562 - Shew_2479 0.73 +0.5
2,914,563 - Shew_2479 0.73 -0.5
2,914,650 - Shew_2479 0.82 +0.5
2,914,938 + -1.9
2,914,949 + -2.1
2,915,227 - Shew_2480 0.13 -2.3
2,915,474 + Shew_2480 0.22 -1.4
2,915,743 + Shew_2480 0.32 -2.3
2,915,762 - Shew_2480 0.33 -4.8
2,915,772 + Shew_2480 0.33 -0.5
2,915,808 + Shew_2480 0.35 -1.9
2,915,995 + Shew_2480 0.42 -2.0
2,915,995 + Shew_2480 0.42 -2.4
2,916,140 - Shew_2480 0.47 -2.7
2,916,146 - Shew_2480 0.48 -0.9
2,916,223 - Shew_2480 0.50 -2.9
2,917,116 - Shew_2480 0.84 -1.5
2,917,116 - Shew_2480 0.84 -2.5
2,917,221 + Shew_2480 0.88 -1.3
2,917,221 + Shew_2480 0.88 -3.7
2,918,100 + +1.5
2,918,108 - -1.5
2,918,109 - -1.5
2,918,159 - +1.1
2,918,178 - +1.1
2,918,255 - +0.6
2,918,257 + +0.1
2,918,257 + +0.8
2,918,369 + +0.4
2,918,444 + +0.0
2,918,485 - -1.6
2,918,499 + Shew_2481 0.10 +0.9

Or see this region's nucleotide sequence