Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1085 and Shew_1086 are separated by 126 nucleotides Shew_1086 and Shew_1087 are separated by 64 nucleotides Shew_1087 and pgi are separated by 229 nucleotides
Shew_1085: Shew_1085 - response regulator receiver protein (RefSeq), at 1,250,067 to 1,251,161
_1085
Shew_1086: Shew_1086 - hemerythrin HHE cation binding domain-containing protein (RefSeq), at 1,251,288 to 1,251,830
_1086
Shew_1087: Shew_1087 - hypothetical protein (RefSeq), at 1,251,895 to 1,252,086
_1087
Shew_1088: pgi - glucose-6-phosphate isomerase (RefSeq), at 1,252,316 to 1,253,953
pgi
Position (kb) 1251
1252 Strain fitness (log2 ratio) -2
-1
0
1 at 1250.604 kb on + strand, within Shew_1085 at 1251.393 kb on - strand, within Shew_1086 at 1251.422 kb on + strand, within Shew_1086 at 1251.520 kb on - strand, within Shew_1086 at 1251.591 kb on + strand, within Shew_1086 at 1251.981 kb on + strand, within Shew_1087 at 1251.981 kb on + strand, within Shew_1087 at 1252.322 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 1,250,604 + Shew_1085 0.49 -0.2 1,251,393 - Shew_1086 0.19 +0.1 1,251,422 + Shew_1086 0.25 -0.5 1,251,520 - Shew_1086 0.43 +0.4 1,251,591 + Shew_1086 0.56 -0.8 1,251,981 + Shew_1087 0.45 -2.2 1,251,981 + Shew_1087 0.45 -2.2 1,252,322 - -2.1
Or see this region's nucleotide sequence