Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lysS and Shew_0813 are separated by 265 nucleotides Shew_0813 and Shew_0814 are separated by 44 nucleotides Shew_0814 and Shew_0815 are separated by 357 nucleotides
Shew_0812: lysS - lysyl-tRNA synthetase (RefSeq), at 933,950 to 935,452
lysS
Shew_0813: Shew_0813 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 935,718 to 938,231
_0813
Shew_0814: Shew_0814 - pseudouridine synthase (RefSeq), at 938,276 to 938,824
_0814
Shew_0815: Shew_0815 - Glucosamine-6-phosphate deaminase (EC 3.5.99.6) <small>(from data)</small>, at 939,182 to 939,988
_0815
Position (kb) 935
936
937
938
939 Strain fitness (log2 ratio) -1
0
1 at 935.799 kb on + strand at 935.935 kb on - strand at 936.154 kb on - strand, within Shew_0813 at 936.163 kb on - strand, within Shew_0813 at 936.361 kb on + strand, within Shew_0813 at 937.180 kb on + strand, within Shew_0813 at 937.563 kb on - strand, within Shew_0813 at 938.168 kb on + strand at 938.210 kb on - strand at 938.281 kb on - strand at 938.372 kb on + strand, within Shew_0814 at 938.777 kb on - strand at 939.056 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 935,799 + +0.1 935,935 - +0.4 936,154 - Shew_0813 0.17 +0.9 936,163 - Shew_0813 0.18 +0.2 936,361 + Shew_0813 0.26 +0.3 937,180 + Shew_0813 0.58 -0.9 937,563 - Shew_0813 0.73 +0.2 938,168 + +0.5 938,210 - +0.5 938,281 - +0.4 938,372 + Shew_0814 0.17 -0.2 938,777 - +0.1 939,056 + -0.5
Or see this region's nucleotide sequence