Strain Fitness in Shewanella loihica PV-4 around Shew_0290

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0289 and ilvM overlap by 4 nucleotidesilvM and Shew_0291 are separated by 26 nucleotides Shew_0289: Shew_0289 - acetolactate synthase 2 catalytic subunit (RefSeq), at 308,543 to 310,216 _0289 Shew_0290: ilvM - acetolactate synthase 2 regulatory subunit (RefSeq), at 310,213 to 310,482 ilvM Shew_0291: Shew_0291 - branched-chain amino acid aminotransferase (RefSeq), at 310,509 to 311,432 _0291 Position (kb) 310 311Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 309.262 kb on + strand, within Shew_0289at 309.272 kb on + strand, within Shew_0289at 309.272 kb on + strand, within Shew_0289at 309.338 kb on + strand, within Shew_0289at 309.346 kb on - strand, within Shew_0289at 309.543 kb on + strand, within Shew_0289at 309.697 kb on + strand, within Shew_0289at 309.730 kb on + strand, within Shew_0289at 309.763 kb on - strand, within Shew_0289at 309.820 kb on - strand, within Shew_0289at 310.036 kb on - strand, within Shew_0289at 310.141 kb on + strandat 310.300 kb on - strand, within ilvMat 310.347 kb on + strand, within ilvMat 310.655 kb on + strand, within Shew_0291at 311.098 kb on + strand, within Shew_0291at 311.106 kb on - strand, within Shew_0291at 311.129 kb on + strand, within Shew_0291at 311.137 kb on - strand, within Shew_0291at 311.137 kb on - strand, within Shew_0291at 311.137 kb on - strand, within Shew_0291at 311.137 kb on - strand, within Shew_0291at 311.424 kb on - strandat 311.424 kb on - strandat 311.459 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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309,262 + Shew_0289 0.43 -2.6
309,272 + Shew_0289 0.44 -0.6
309,272 + Shew_0289 0.44 -1.0
309,338 + Shew_0289 0.47 -1.4
309,346 - Shew_0289 0.48 -5.4
309,543 + Shew_0289 0.60 -1.2
309,697 + Shew_0289 0.69 -1.7
309,730 + Shew_0289 0.71 -2.3
309,763 - Shew_0289 0.73 -6.6
309,820 - Shew_0289 0.76 -3.0
310,036 - Shew_0289 0.89 -4.1
310,141 + -0.8
310,300 - ilvM Shew_0290 0.32 -4.0
310,347 + ilvM Shew_0290 0.50 -2.0
310,655 + Shew_0291 0.16 -2.3
311,098 + Shew_0291 0.64 -4.0
311,106 - Shew_0291 0.65 -5.9
311,129 + Shew_0291 0.67 -3.1
311,137 - Shew_0291 0.68 -4.8
311,137 - Shew_0291 0.68 -5.4
311,137 - Shew_0291 0.68 -6.9
311,137 - Shew_0291 0.68 -3.9
311,424 - -2.9
311,424 - -3.3
311,459 + -1.0

Or see this region's nucleotide sequence