Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0287 and Shew_0288 are separated by 192 nucleotides Shew_0288 and Shew_0289 are separated by 508 nucleotides
Shew_0287: Shew_0287 - DNA-binding transcriptional regulator IlvY (RefSeq), at 305,476 to 306,360
_0287
Shew_0288: Shew_0288 - ketol-acid reductoisomerase (RefSeq), at 306,553 to 308,034
_0288
Shew_0289: Shew_0289 - acetolactate synthase 2 catalytic subunit (RefSeq), at 308,543 to 310,216
_0289
Position (kb) 306
307
308
309 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 305.651 kb on + strand, within Shew_0287 at 305.656 kb on + strand, within Shew_0287 at 305.657 kb on - strand, within Shew_0287 at 305.709 kb on + strand, within Shew_0287 at 305.824 kb on + strand, within Shew_0287 at 306.262 kb on + strand, within Shew_0287 at 306.267 kb on + strand, within Shew_0287 at 306.270 kb on - strand, within Shew_0287 at 306.275 kb on - strand at 306.275 kb on - strand at 306.310 kb on + strand at 306.317 kb on + strand at 306.319 kb on - strand at 306.698 kb on + strand at 306.698 kb on + strand at 306.698 kb on + strand at 306.743 kb on + strand, within Shew_0288 at 306.777 kb on + strand, within Shew_0288 at 306.973 kb on + strand, within Shew_0288 at 307.072 kb on - strand, within Shew_0288 at 307.112 kb on + strand, within Shew_0288 at 307.203 kb on + strand, within Shew_0288 at 307.334 kb on + strand, within Shew_0288 at 307.725 kb on + strand, within Shew_0288 at 307.827 kb on + strand, within Shew_0288 at 307.846 kb on - strand, within Shew_0288 at 307.982 kb on - strand at 308.111 kb on + strand at 308.111 kb on + strand at 308.119 kb on - strand at 308.334 kb on + strand at 308.540 kb on - strand at 308.650 kb on + strand at 308.702 kb on - strand at 308.867 kb on + strand, within Shew_0289 at 308.965 kb on - strand, within Shew_0289
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 305,651 + Shew_0287 0.20 -3.8 305,656 + Shew_0287 0.20 -2.5 305,657 - Shew_0287 0.20 -5.5 305,709 + Shew_0287 0.26 -2.0 305,824 + Shew_0287 0.39 -4.3 306,262 + Shew_0287 0.89 -4.8 306,267 + Shew_0287 0.89 -3.8 306,270 - Shew_0287 0.90 -3.5 306,275 - -7.3 306,275 - -7.3 306,310 + -2.0 306,317 + -5.9 306,319 - -6.6 306,698 + -5.8 306,698 + -5.8 306,698 + -3.4 306,743 + Shew_0288 0.13 -6.2 306,777 + Shew_0288 0.15 -3.4 306,973 + Shew_0288 0.28 -5.4 307,072 - Shew_0288 0.35 -4.5 307,112 + Shew_0288 0.38 -0.7 307,203 + Shew_0288 0.44 -4.9 307,334 + Shew_0288 0.53 -7.0 307,725 + Shew_0288 0.79 -3.8 307,827 + Shew_0288 0.86 -6.8 307,846 - Shew_0288 0.87 -5.4 307,982 - -4.2 308,111 + -0.1 308,111 + +0.3 308,119 - -0.5 308,334 + -6.3 308,540 - -6.6 308,650 + -2.8 308,702 - -5.9 308,867 + Shew_0289 0.19 -2.0 308,965 - Shew_0289 0.25 -1.7
Or see this region's nucleotide sequence