Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0198 and Shew_0199 are separated by 57 nucleotides Shew_0199 and Shew_0200 overlap by 1 nucleotides Shew_0200 and Shew_0201 are separated by 117 nucleotides
Shew_0198: Shew_0198 - competence/damage-inducible protein CinA (RefSeq), at 209,239 to 210,513
_0198
Shew_0199: Shew_0199 - hypothetical protein (RefSeq), at 210,571 to 211,110
_0199
Shew_0200: Shew_0200 - phosphoenolpyruvate carboxylase (RefSeq), at 211,110 to 213,746
_0200
Shew_0201: Shew_0201 - acetylornithine deacetylase (RefSeq), at 213,864 to 215,024
_0201
Position (kb) 211
212
213
214 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 210.152 kb on + strand, within Shew_0198 at 210.152 kb on + strand, within Shew_0198 at 210.420 kb on + strand at 210.449 kb on + strand at 210.457 kb on - strand at 210.719 kb on + strand, within Shew_0199 at 210.749 kb on - strand, within Shew_0199 at 210.777 kb on + strand, within Shew_0199 at 211.249 kb on - strand at 211.426 kb on - strand, within Shew_0200 at 211.860 kb on + strand, within Shew_0200 at 211.868 kb on - strand, within Shew_0200 at 211.868 kb on - strand, within Shew_0200 at 211.991 kb on + strand, within Shew_0200 at 212.044 kb on + strand, within Shew_0200 at 212.120 kb on + strand, within Shew_0200 at 212.128 kb on - strand, within Shew_0200 at 212.141 kb on + strand, within Shew_0200 at 212.230 kb on - strand, within Shew_0200 at 212.507 kb on + strand, within Shew_0200 at 212.688 kb on - strand, within Shew_0200 at 212.822 kb on + strand, within Shew_0200 at 212.875 kb on - strand, within Shew_0200 at 212.999 kb on + strand, within Shew_0200 at 213.116 kb on + strand, within Shew_0200 at 213.345 kb on - strand, within Shew_0200 at 213.616 kb on - strand at 213.671 kb on - strand at 213.965 kb on + strand at 213.965 kb on + strand at 213.965 kb on + strand at 213.973 kb on - strand at 214.079 kb on + strand, within Shew_0201 at 214.131 kb on + strand, within Shew_0201 at 214.134 kb on - strand, within Shew_0201 at 214.136 kb on + strand, within Shew_0201 at 214.139 kb on - strand, within Shew_0201 at 214.144 kb on - strand, within Shew_0201 at 214.164 kb on - strand, within Shew_0201 at 214.549 kb on + strand, within Shew_0201 at 214.549 kb on + strand, within Shew_0201 at 214.557 kb on - strand, within Shew_0201 at 214.557 kb on - strand, within Shew_0201 at 214.557 kb on - strand, within Shew_0201 at 214.557 kb on - strand, within Shew_0201 at 214.557 kb on - strand, within Shew_0201 at 214.557 kb on - strand, within Shew_0201 at 214.741 kb on - strand, within Shew_0201
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 210,152 + Shew_0198 0.72 +0.8 210,152 + Shew_0198 0.72 -0.1 210,420 + +0.2 210,449 + -0.3 210,457 - +0.1 210,719 + Shew_0199 0.27 +0.0 210,749 - Shew_0199 0.33 +1.4 210,777 + Shew_0199 0.38 +0.2 211,249 - -6.7 211,426 - Shew_0200 0.12 -4.3 211,860 + Shew_0200 0.28 -5.2 211,868 - Shew_0200 0.29 -2.6 211,868 - Shew_0200 0.29 -1.2 211,991 + Shew_0200 0.33 -3.7 212,044 + Shew_0200 0.35 -3.7 212,120 + Shew_0200 0.38 -2.9 212,128 - Shew_0200 0.39 -5.6 212,141 + Shew_0200 0.39 -6.1 212,230 - Shew_0200 0.42 -5.1 212,507 + Shew_0200 0.53 -5.1 212,688 - Shew_0200 0.60 -3.0 212,822 + Shew_0200 0.65 -6.1 212,875 - Shew_0200 0.67 -4.1 212,999 + Shew_0200 0.72 -3.7 213,116 + Shew_0200 0.76 -0.6 213,345 - Shew_0200 0.85 -2.4 213,616 - -5.8 213,671 - -7.1 213,965 + -0.9 213,965 + +0.9 213,965 + -1.0 213,973 - +0.9 214,079 + Shew_0201 0.19 -3.0 214,131 + Shew_0201 0.23 -1.8 214,134 - Shew_0201 0.23 +0.4 214,136 + Shew_0201 0.23 -0.9 214,139 - Shew_0201 0.24 +0.4 214,144 - Shew_0201 0.24 +0.2 214,164 - Shew_0201 0.26 +1.1 214,549 + Shew_0201 0.59 -1.5 214,549 + Shew_0201 0.59 -1.3 214,557 - Shew_0201 0.60 -0.6 214,557 - Shew_0201 0.60 -0.2 214,557 - Shew_0201 0.60 -3.2 214,557 - Shew_0201 0.60 -0.2 214,557 - Shew_0201 0.60 -1.0 214,557 - Shew_0201 0.60 -0.9 214,741 - Shew_0201 0.76 +0.3
Or see this region's nucleotide sequence