Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0037 and Shew_0038 are separated by 162 nucleotides Shew_0038 and Shew_0039 are separated by 1 nucleotides Shew_0039 and Shew_0040 are separated by 508 nucleotides
Shew_0037: Shew_0037 - phosphoesterase, PA-phosphatase related (RefSeq), at 42,482 to 43,300
_0037
Shew_0038: Shew_0038 - excinuclease ABC subunit C (RefSeq), at 43,463 to 43,756
_0038
Shew_0039: Shew_0039 - oligopeptidase B (RefSeq), at 43,758 to 45,818
_0039
Shew_0040: Shew_0040 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 46,327 to 46,980
_0040
Position (kb) 43
44
45
46 Strain fitness (log2 ratio) -1
0
1
2
3 at 42.798 kb on - strand, within Shew_0037 at 42.840 kb on - strand, within Shew_0037 at 42.869 kb on + strand, within Shew_0037 at 43.138 kb on - strand, within Shew_0037 at 43.192 kb on - strand, within Shew_0037 at 43.586 kb on - strand, within Shew_0038 at 43.621 kb on - strand, within Shew_0038 at 43.683 kb on + strand, within Shew_0038 at 43.691 kb on - strand, within Shew_0038 at 43.726 kb on + strand, within Shew_0038 at 43.940 kb on + strand at 43.955 kb on + strand at 43.955 kb on + strand at 44.135 kb on - strand, within Shew_0039 at 44.256 kb on + strand, within Shew_0039 at 44.554 kb on + strand, within Shew_0039 at 44.694 kb on + strand, within Shew_0039 at 44.719 kb on - strand, within Shew_0039 at 44.795 kb on - strand, within Shew_0039 at 45.046 kb on + strand, within Shew_0039 at 45.163 kb on + strand, within Shew_0039 at 45.231 kb on + strand, within Shew_0039 at 45.407 kb on - strand, within Shew_0039 at 45.525 kb on + strand, within Shew_0039 at 45.525 kb on + strand, within Shew_0039 at 45.525 kb on + strand, within Shew_0039 at 45.592 kb on + strand, within Shew_0039 at 45.595 kb on - strand, within Shew_0039 at 45.739 kb on - strand at 45.875 kb on + strand at 45.926 kb on - strand at 45.982 kb on - strand at 46.049 kb on - strand at 46.222 kb on - strand at 46.459 kb on - strand, within Shew_0040 at 46.466 kb on - strand, within Shew_0040 at 46.486 kb on - strand, within Shew_0040 at 46.503 kb on - strand, within Shew_0040 at 46.782 kb on - strand, within Shew_0040 at 46.796 kb on + strand, within Shew_0040
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 42,798 - Shew_0037 0.39 -0.1 42,840 - Shew_0037 0.44 +0.9 42,869 + Shew_0037 0.47 -1.6 43,138 - Shew_0037 0.80 +0.1 43,192 - Shew_0037 0.87 +0.3 43,586 - Shew_0038 0.42 +0.0 43,621 - Shew_0038 0.54 +0.6 43,683 + Shew_0038 0.75 +0.3 43,691 - Shew_0038 0.78 -0.1 43,726 + Shew_0038 0.89 +0.2 43,940 + -0.1 43,955 + -0.2 43,955 + -0.5 44,135 - Shew_0039 0.18 +1.0 44,256 + Shew_0039 0.24 +1.4 44,554 + Shew_0039 0.39 -0.1 44,694 + Shew_0039 0.45 -0.6 44,719 - Shew_0039 0.47 -0.7 44,795 - Shew_0039 0.50 +0.0 45,046 + Shew_0039 0.62 -0.1 45,163 + Shew_0039 0.68 -0.8 45,231 + Shew_0039 0.71 -0.5 45,407 - Shew_0039 0.80 -0.8 45,525 + Shew_0039 0.86 -1.0 45,525 + Shew_0039 0.86 +0.0 45,525 + Shew_0039 0.86 -0.4 45,592 + Shew_0039 0.89 -1.6 45,595 - Shew_0039 0.89 -0.0 45,739 - -0.0 45,875 + -0.0 45,926 - -1.2 45,982 - -0.7 46,049 - +3.5 46,222 - -0.9 46,459 - Shew_0040 0.20 +0.1 46,466 - Shew_0040 0.21 -0.1 46,486 - Shew_0040 0.24 -0.3 46,503 - Shew_0040 0.27 -0.8 46,782 - Shew_0040 0.70 +0.2 46,796 + Shew_0040 0.72 -0.6
Or see this region's nucleotide sequence