Strain Fitness in Shewanella loihica PV-4 around Shew_0005

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0004 and Shew_0005 are separated by 121 nucleotidesShew_0005 and Shew_0006 are separated by 33 nucleotidesShew_0006 and Shew_0007 overlap by 11 nucleotides Shew_0004: Shew_0004 - DNA gyrase, B subunit (RefSeq), at 3,783 to 6,200 _0004 Shew_0005: Shew_0005 - hypothetical protein (RefSeq), at 6,322 to 7,041 _0005 Shew_0006: Shew_0006 - LamB/YcsF family protein (RefSeq), at 7,075 to 7,803 _0006 Shew_0007: Shew_0007 - urea amidolyase related protein (RefSeq), at 7,793 to 8,725 _0007 Position (kb) 6 7 8Strain fitness (log2 ratio) -1 0 1at 6.598 kb on + strand, within Shew_0005at 6.598 kb on + strand, within Shew_0005at 6.598 kb on + strand, within Shew_0005at 6.606 kb on - strand, within Shew_0005at 6.606 kb on - strand, within Shew_0005at 6.606 kb on - strand, within Shew_0005at 6.795 kb on + strand, within Shew_0005at 6.795 kb on + strand, within Shew_0005at 6.803 kb on - strand, within Shew_0005at 6.823 kb on + strand, within Shew_0005at 6.925 kb on - strand, within Shew_0005at 6.950 kb on - strand, within Shew_0005at 6.998 kb on + strandat 7.127 kb on - strandat 7.154 kb on - strand, within Shew_0006at 7.219 kb on - strand, within Shew_0006at 7.326 kb on + strand, within Shew_0006at 7.326 kb on + strand, within Shew_0006at 7.326 kb on + strand, within Shew_0006at 7.334 kb on - strand, within Shew_0006at 7.511 kb on + strand, within Shew_0006at 7.526 kb on + strand, within Shew_0006at 7.799 kb on - strandat 7.902 kb on + strand, within Shew_0007at 7.902 kb on + strand, within Shew_0007at 7.902 kb on + strand, within Shew_0007at 7.902 kb on + strand, within Shew_0007at 7.902 kb on + strand, within Shew_0007at 7.910 kb on - strand, within Shew_0007at 7.910 kb on - strand, within Shew_0007at 7.910 kb on - strand, within Shew_0007at 7.910 kb on - strand, within Shew_0007at 7.910 kb on - strand, within Shew_0007at 7.910 kb on - strand, within Shew_0007

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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6,598 + Shew_0005 0.38 +0.4
6,598 + Shew_0005 0.38 -1.0
6,598 + Shew_0005 0.38 +0.0
6,606 - Shew_0005 0.39 -0.1
6,606 - Shew_0005 0.39 -0.8
6,606 - Shew_0005 0.39 -1.3
6,795 + Shew_0005 0.66 -1.7
6,795 + Shew_0005 0.66 -0.2
6,803 - Shew_0005 0.67 +0.0
6,823 + Shew_0005 0.70 -0.1
6,925 - Shew_0005 0.84 +0.8
6,950 - Shew_0005 0.87 -0.1
6,998 + +0.3
7,127 - -0.1
7,154 - Shew_0006 0.11 +0.4
7,219 - Shew_0006 0.20 +0.3
7,326 + Shew_0006 0.34 -0.0
7,326 + Shew_0006 0.34 +0.3
7,326 + Shew_0006 0.34 +0.8
7,334 - Shew_0006 0.36 -0.2
7,511 + Shew_0006 0.60 -0.2
7,526 + Shew_0006 0.62 +0.2
7,799 - +0.6
7,902 + Shew_0007 0.12 -0.1
7,902 + Shew_0007 0.12 -0.2
7,902 + Shew_0007 0.12 -0.6
7,902 + Shew_0007 0.12 -0.2
7,902 + Shew_0007 0.12 -0.3
7,910 - Shew_0007 0.13 -1.2
7,910 - Shew_0007 0.13 +0.1
7,910 - Shew_0007 0.13 +0.1
7,910 - Shew_0007 0.13 -0.7
7,910 - Shew_0007 0.13 -0.3
7,910 - Shew_0007 0.13 -0.2

Or see this region's nucleotide sequence